Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0025021

Physical Location & Seq

Genomic Coordinates Forward (+)

16720543 .. 16724879

Gene Structure 4337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG121100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGGTGCTGATCAATTAATTGCTAAAACACCTCCAGTAGTCCCGAACAAGTGTCCAATTGGGAATGTAGTGGATGTTGGGTGTGGGATTGGAGGGAGCTCCAGATATCTGGCTAGCAAATACGGGGCCAATTGCAAAGGGAATAGACTCAGAGGGCCAATGATTAATCACATTCTAGAGGCTTCAAGATTCATTATGCGAGAGTCAAGAACTGCCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0010189 GO:0016740 GO:0016741 GO:0018130 GO:0032259 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050342 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

73

Amino Acids

7.72

Weight (kDa)

9.81

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025021)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0034841
rosa_samantha	Rh2BG221700 Rh6DG121100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	186
AluBI	AGCT	1 cut(s)	99
AluI	AGCT	1 cut(s)	99
Alw21I	GWGCWC	1 cut(s)	101
AoxI	GGCC	2 cut(s)	126, 155
AseI	ATTAAT	2 cut(s)	17, 165
AspS9I	GGNCC	2 cut(s)	126, 155
AsuC2I	CCSGG	1 cut(s)	217
AsuNHI	GCTAGC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	101
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	217
BfaI	CTAG	2 cut(s)	114, 176
Bme1390I	CCNGG	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	126, 155
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	217
BmtI	GCTAGC	1 cut(s)	117
BpmI	CTGGAG	2 cut(s)	18, 85
BpuMI	CCSGG	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	35
BseGI	GGATG	1 cut(s)	79
BseMII	CTCAG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	128, 157
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	128, 157
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	10
BspANI	GGCC	2 cut(s)	128, 157
BspCNI	CTCAG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	127
BspOI	GCTAGC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	35
BssMI	GATC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	215
BstXI	CCANNNNNNTGG	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	128, 157
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	126, 155
CviJI	RGCY	5 cut(s)	99, 113, 128, 157, 182
CviKI_1	RGCY	5 cut(s)	99, 113, 128, 157, 182
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	99
EcoRV	GATATC	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	101
FaiI	YATR	1 cut(s)	197
FaqI	GGGAC	1 cut(s)	26
FbaI	TGATCA	1 cut(s)	10
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	101
FspBI	CTAG	2 cut(s)	114, 176
GsuI	CTGGAG	2 cut(s)	18, 85
HaeIII	GGCC	2 cut(s)	128, 157
HapII	CCGG	1 cut(s)	216
HinfI	GANTC	3 cut(s)	147, 189, 203
HpaII	CCGG	1 cut(s)	216
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	5 cut(s)	43, 102, 176, 186, 207
HpyCH4V	TGCA	1 cut(s)	135
HpyF3I	CTNAG	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	96, 104
LpnPI	CCDG	3 cut(s)	48, 95, 115
MaeI	CTAG	2 cut(s)	114, 176
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MfeI	CAATTG	2 cut(s)	57, 130
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	4 cut(s)	14, 18, 57, 130
MlyI	GAGTC	2 cut(s)	141, 212
MnlI	CCTC	4 cut(s)	42, 86, 146, 172
MseI	TTAA	2 cut(s)	17, 165
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	217
MunI	CAATTG	2 cut(s)	57, 130
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	1 cut(s)	10
NheI	GCTAGC	1 cut(s)	113
NlaIV	GGNNCC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	189
PleI	GAGTC	2 cut(s)	141, 211
PpsI	GAGTC	2 cut(s)	141, 211
PshBI	ATTAAT	2 cut(s)	17, 165
Psp124BI	GAGCTC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	2 cut(s)	126, 155
SacI	GAGCTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	17, 165
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	2 cut(s)	126, 155
SchI	GAGTC	2 cut(s)	141, 212
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	2 cut(s)	34, 101
Sse9I	AATT	4 cut(s)	14, 18, 57, 130
SspMI	CTAG	2 cut(s)	114, 176
SstI	GAGCTC	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	215
TasI	AATT	4 cut(s)	14, 18, 57, 130
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	2 cut(s)	17, 165
Tru9I	TTAA	2 cut(s)	17, 165
TspDTI	ATGAA	1 cut(s)	181
VspI	ATTAAT	2 cut(s)	17, 165
XbaI	TCTAGA	1 cut(s)	175
XspI	CTAG	2 cut(s)	114, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.