Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019580

Physical Location & Seq

Genomic Coordinates Reverse (-)

37815977 .. 37817128

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGATAGCTTTCAACAACTTTCCCTCCATTTTTGTGCCTTTAGTAGGCTTAGTATTTCCGGCAATTGCAATGGTTTCTTTATCTCTTCATAGTATGAGTTGGCGATCAGAACGTATATGGATAGAACTTATAGCGGGATCTCGAAAAATAAGTAATTTCAGTTGGGCCCTTATTCTTTTTTTAGGTTCATTAGGGTTTGTATTGGTTGGAACCTCCAGTTATTTTGGTAGGAATTTTATATCTTTATTTCCTTCTCAGCAAATAAATTTTTTTCCACAGGGGATCGTGATGTCTTTCTATGGGATCGCGGGTCTTTTTATTAGCTCCTACTTGTGGTGCACAATTTCGTGGAATGTAGGTAGTGGTTATGATCGATTCGATATAAAAGAGGGTATAGTGTGTATTTTTCGTTGGGGATTTCCTGGAAAAAACCGTCGCATATTTCTGCGATTCCTTATGAAAGATATTCAGTCCATCAGAATAGAAAATAAAGAGGGTCTTTTTGCTCGTCGGGTCCTTTATATGGAAATCAGAGGCCAGGGGGCCATTCCCTTGACGCGTACTGATGAGAATTTGACTCCACGAGAAATTGAGCAAAAAGCTGCTGAATTGGCCTATTTCTTGCGCGTACCAAATGAAGTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048564 GO:0051082 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf4

Protein Analysis

215

Amino Acids

24.7

Weight (kDa)

9.74

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSI_8	PF00796	8 - 29	2.8e-09	Photosystem I reaction centre subunit VIII
Ycf4	PF02392	38 - 205	6.1e-72	Ycf4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00520
malus_domestica	MD15G1388400.v1.1
pyrus_communis	pycom02g25860
rosa_chinensis	RchiOBHm_Chr5g0042981 RchiOBHm_CPg0502091
rosa_samantha	Rh5BG294600 Rh5DG304400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	308, 559, 627
AciI	CCGC	2 cut(s)	134, 308
AclWI	GGATC	3 cut(s)	145, 290, 311
AcsI	RAATTY	3 cut(s)	232, 265, 571
AfaI	GTAC	2 cut(s)	562, 630
AfiI	CCNNNNNNNGG	3 cut(s)	44, 333, 523
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	1 cut(s)	13
AjnI	CCWGG	2 cut(s)	421, 537
AluBI	AGCT	3 cut(s)	8, 324, 602
AluI	AGCT	3 cut(s)	8, 324, 602
Alw21I	GWGCWC	1 cut(s)	341
Alw44I	GTGCAC	1 cut(s)	337
AlwI	GGATC	3 cut(s)	145, 290, 311
AoxI	GGCC	4 cut(s)	165, 535, 543, 612
ApaI	GGGCCC	1 cut(s)	169
ApaLI	GTGCAC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	3 cut(s)	232, 265, 571
AspLEI	GCGC	1 cut(s)	627
AspS9I	GGNCC	4 cut(s)	165, 166, 514, 543
AvaII	GGWCC	1 cut(s)	514
BaeGI	GKGCMC	2 cut(s)	169, 341
BanII	GRGCYC	1 cut(s)	169
BauI	CACGAG	1 cut(s)	582
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	1 cut(s)	482
BciT130I	CCWGG	2 cut(s)	423, 539
BisI	GCNGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	604
Bme1390I	CCNGG	2 cut(s)	423, 539
Bme18I	GGWCC	1 cut(s)	514
BmgT120I	GGNCC	4 cut(s)	165, 166, 514, 543
BmiI	GGNNCC	4 cut(s)	167, 211, 515, 544
BmrFI	CCNGG	2 cut(s)	423, 539
BpmI	CTGGAG	1 cut(s)	199
Bsa29I	ATCGAT	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	538
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 333, 523
Bse1I	ACTGG	1 cut(s)	216
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	423, 539
BseCI	ATCGAT	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	538
BseLI	CCNNNNNNNGG	3 cut(s)	44, 333, 523
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	216
BseSI	GKGCMC	2 cut(s)	169, 341
BseXI	GCAGC	1 cut(s)	589
Bsh1236I	CGCG	3 cut(s)	308, 559, 627
BshFI	GGCC	4 cut(s)	167, 537, 545, 614
BshVI	ATCGAT	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	341
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	44, 333, 523
BsnI	GGCC	4 cut(s)	167, 537, 545, 614
Bsp120I	GGGCCC	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	169, 341
Bsp143I	GATC	5 cut(s)	104, 137, 282, 303, 370
BspACI	CCGC	2 cut(s)	134, 308
BspANI	GGCC	4 cut(s)	167, 537, 545, 614
BspCNI	CTCAG	1 cut(s)	268
BspDI	ATCGAT	1 cut(s)	373
BspFNI	CGCG	3 cut(s)	308, 559, 627
BspLI	GGNNCC	4 cut(s)	167, 211, 515, 544
BspPI	GGATC	3 cut(s)	145, 290, 311
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	5 cut(s)	104, 137, 282, 303, 370
BssSI	CACGAG	1 cut(s)	582
Bst2BI	CACGAG	1 cut(s)	582
Bst2UI	CCWGG	2 cut(s)	423, 539
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	49, 255
BstENI	CCTNNNNNAGG	1 cut(s)	42
BstFNI	CGCG	3 cut(s)	308, 559, 627
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	5 cut(s)	107, 140, 285, 306, 373
BstMBI	GATC	5 cut(s)	104, 137, 282, 303, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	611
BstNI	CCWGG	2 cut(s)	423, 539
BstSCI	CCNGG	2 cut(s)	421, 537
BstSLI	GKGCMC	2 cut(s)	169, 341
BstUI	CGCG	3 cut(s)	308, 559, 627
BstV1I	GCAGC	1 cut(s)	589
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
Bsu15I	ATCGAT	1 cut(s)	373
BsuRI	GGCC	4 cut(s)	167, 537, 545, 614
BsuTUI	ATCGAT	1 cut(s)	373
CfoI	GCGC	1 cut(s)	627
Cfr13I	GGNCC	4 cut(s)	165, 166, 514, 543
ClaI	ATCGAT	1 cut(s)	373
CseI	GACGC	1 cut(s)	565
Csp6I	GTAC	2 cut(s)	561, 629
CviJI	RGCY	8 cut(s)	8, 48, 167, 324, 537, 545, 602, 614
CviKI_1	RGCY	8 cut(s)	8, 48, 167, 324, 537, 545, 602, 614
CviQI	GTAC	2 cut(s)	561, 629
DdeI	CTNAG	2 cut(s)	49, 255
DpnI	GATC	5 cut(s)	106, 139, 284, 305, 372
DpnII	GATC	5 cut(s)	104, 137, 282, 303, 370
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	514
EcoNI	CCTNNNNNAGG	1 cut(s)	42
EcoO109I	RGGNCCY	2 cut(s)	166, 514
EcoRII	CCWGG	2 cut(s)	421, 537
EcoT38I	GRGCYC	1 cut(s)	169
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FauI	CCCGC	2 cut(s)	127, 301
Fnu4HI	GCNGC	1 cut(s)	603
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	603
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	1 cut(s)	603
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	4 cut(s)	167, 537, 545, 614
HapII	CCGG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	1 cut(s)	627
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HinfI	GANTC	3 cut(s)	375, 450, 577
HpaII	CCGG	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	3 cut(s)	109, 479, 533
Hpy188III	TCNNGA	2 cut(s)	141, 286
Hpy8I	GTNNAC	1 cut(s)	339
Hpy99I	CGWCG	2 cut(s)	438, 513
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	68, 339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	611
HpyF3I	CTNAG	2 cut(s)	49, 255
HpySE526I	ACGT	1 cut(s)	112
HspAI	GCGC	1 cut(s)	625
Kzo9I	GATC	5 cut(s)	104, 137, 282, 303, 370
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	7 cut(s)	72, 229, 263, 408, 435, 524, 551
Lsp1109I	GCAGC	1 cut(s)	589
MaeII	ACGT	1 cut(s)	112
MalI	GATC	5 cut(s)	106, 139, 284, 305, 372
MboI	GATC	5 cut(s)	104, 137, 282, 303, 370
MboII	GAAGA	1 cut(s)	77
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	2 cut(s)	169, 341
MluCI	AATT	8 cut(s)	63, 154, 232, 265, 342, 571, 588, 608
MluI	ACGCGT	1 cut(s)	557
MlyI	GAGTC	1 cut(s)	571
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	5 cut(s)	34, 223, 382, 487, 527
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	423, 539
MunI	CAATTG	1 cut(s)	63
MvaI	CCWGG	2 cut(s)	423, 539
MvnI	CGCG	3 cut(s)	308, 559, 627
MwoI	GCNNNNNNNGC	1 cut(s)	611
NdeII	GATC	5 cut(s)	104, 137, 282, 303, 370
NlaIV	GGNNCC	4 cut(s)	167, 211, 515, 544
PfeI	GAWTC	2 cut(s)	375, 450
PfoI	TCCNGGA	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	604
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PpuMI	RGGWCCY	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	2 cut(s)	421, 537
PspGI	CCWGG	2 cut(s)	421, 537
PspN4I	GGNNCC	4 cut(s)	167, 211, 515, 544
PspOMI	GGGCCC	1 cut(s)	165
PspPI	GGNCC	4 cut(s)	165, 166, 514, 543
PspPPI	RGGWCCY	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	137
RsaI	GTAC	2 cut(s)	562, 630
RsaNI	GTAC	2 cut(s)	561, 629
RseI	CAYNNNNRTG	1 cut(s)	32
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	5 cut(s)	104, 137, 282, 303, 370
Sau96I	GGNCC	4 cut(s)	165, 166, 514, 543
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	2 cut(s)	423, 539
SduI	GDGCHC	2 cut(s)	169, 341
SetI	ASST	7 cut(s)	10, 115, 187, 215, 326, 361, 604
SinI	GGWCC	1 cut(s)	514
SmiMI	CAYNNNNRTG	1 cut(s)	32
Sse9I	AATT	8 cut(s)	63, 154, 232, 265, 342, 571, 588, 608
SsiI	CCGC	2 cut(s)	134, 308
StyD4I	CCNGG	2 cut(s)	421, 537
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	3 cut(s)	142, 373, 378
TasI	AATT	8 cut(s)	63, 154, 232, 265, 342, 571, 588, 608
TfiI	GAWTC	2 cut(s)	375, 450
TseI	GCWGC	1 cut(s)	602
TspDTI	ATGAA	3 cut(s)	77, 177, 473
VneI	GTGCAC	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	514
XagI	CCTNNNNNAGG	1 cut(s)	42
XapI	RAATTY	3 cut(s)	232, 265, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.