RchiOBHm_Chr5g0046721

BTB POZ domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
42956949 .. 42957348
400 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 225 bp
ATGTCGAGCTCCGAGAGCAATGTGTTCGATGTGAGGTTGAATTTGAGAGGGAAAAAGGGTGGGGGTTTTAGAGAAGTCATTGAGCTCATGTTTGAGGATGATGACATCACCAAGCGCCTCTTCAGGATTGGAATGTATAGAGTTGTTGATGTGCTTAAGGTAAATGTAAGGAAGTTGGGAATGAAAGGAAAATGTGAAAATTGGATGATACGAACTCCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.62

Weight (kDa)

9.8

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020552)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0046721
rosa_laevigata RLG00000000941
rosa_roxburghii Rroxscaffold_5G00382490
rosa_rugosa Rorug05G0282300
rosa_samantha Rh2DG446300 Rh5BG319500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 106
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 1 cut(s) 40
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 2 cut(s) 9, 85
AluI AGCT 2 cut(s) 9, 85
Alw21I GWGCWC 2 cut(s) 11, 87
ApoI RAATTY 1 cut(s) 40
AspLEI GCGC 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 100
BanII GRGCYC 2 cut(s) 11, 87
Bbv12I GWGCWC 2 cut(s) 11, 87
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BfoI RGCGCY 1 cut(s) 118
BfrI CTTAAG 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 25
BseGI GGATG 2 cut(s) 103, 210
BseMI GCAATG 1 cut(s) 25
BsiHKAI GWGCWC 2 cut(s) 11, 87
Bsp1286I GDGCHC 2 cut(s) 11, 87
BspTI CTTAAG 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 25
Bst6I CTCTTC 1 cut(s) 125
BstAFI CTTAAG 1 cut(s) 155
BstF5I GGATG 2 cut(s) 103, 210
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 15
BtsCI GGATG 2 cut(s) 103, 210
CfoI GCGC 1 cut(s) 117
CviAII CATG 1 cut(s) 88
CviJI RGCY 2 cut(s) 9, 85
CviKI_1 RGCY 2 cut(s) 9, 85
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Ecl136II GAGCTC 2 cut(s) 9, 85
Eco24I GRGCYC 2 cut(s) 11, 87
Eco53kI GAGCTC 2 cut(s) 9, 85
Eco57I CTGAAG 1 cut(s) 106
EcoICRI GAGCTC 2 cut(s) 9, 85
EcoT38I GRGCYC 2 cut(s) 11, 87
FaeI CATG 1 cut(s) 91
FaiI YATR 2 cut(s) 89, 138
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 1 cut(s) 87
FokI GGATG 2 cut(s) 110, 217
FriOI GRGCYC 2 cut(s) 11, 87
GlaI GCGC 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 118
HhaI GCGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 1 cut(s) 109
MboII GAAGA 1 cut(s) 112
MhlI GDGCHC 2 cut(s) 11, 87
MluCI AATT 2 cut(s) 40, 199
MnlI CCTC 4 cut(s) 27, 41, 88, 128
MseI TTAA 1 cut(s) 156
MspCI CTTAAG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 15
NlaIII CATG 1 cut(s) 91
Psp124BI GAGCTC 2 cut(s) 11, 87
SacI GAGCTC 2 cut(s) 11, 87
SaqAI TTAA 1 cut(s) 156
SduI GDGCHC 2 cut(s) 11, 87
SetI ASST 4 cut(s) 11, 38, 87, 162
SgeI CNNG 5 cut(s) 18, 25, 100, 124, 136
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 2 cut(s) 40, 199
SstI GAGCTC 2 cut(s) 11, 87
TaqI TCGA 2 cut(s) 5, 27
TasI AATT 2 cut(s) 40, 199
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TspDTI ATGAA 1 cut(s) 197
Vha464I CTTAAG 1 cut(s) 155
XapI RAATTY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.