Rh2DG446300

BTB POZ domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
64834766 .. 64836526
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG446300.1

Sequence Viewer

Length: 309 bp
ATGTCGAACTCCGAGAGCAATGTGTTCGATGTGAGGTTGAATTTGAGAGGGAAAAGGGGCGGGGGTTTTAGAGAAGCCATTGAGCTCATGTTTGAGGATGACGACATCACCAAGCGCCTCTTGAGGATTGGAATGTATAGAGTTATTGATGTGCTTGAGCTTTTTGATGGAATCAAGATAGTTCATATCCATCCCGAAAAGGAAATCATCATCGAGTTCATTGAGAACAGCAACTATAAGTTGGTCACTGTAAAGAATAAAACAATGGTTCTCCAGCTTCACATGGACAAAGCTAAGTTGTTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.87

Weight (kDa)

6.84

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020552)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0046721
rosa_laevigata RLG00000000941
rosa_roxburghii Rroxscaffold_5G00382490
rosa_rugosa Rorug05G0282300
rosa_samantha Rh2DG446300 Rh5BG319500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AcsI RAATTY 1 cut(s) 40
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 4 cut(s) 85, 160, 277, 293
AluI AGCT 4 cut(s) 85, 160, 277, 293
Alw21I GWGCWC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 40
AspLEI GCGC 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 100
BanII GRGCYC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 87
BccI CCATC 2 cut(s) 161, 198
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BfoI RGCGCY 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 257
BpuEI CTTGAG 2 cut(s) 142, 176
Bse3DI GCAATG 1 cut(s) 25
BseGI GGATG 2 cut(s) 103, 190
BseMI GCAATG 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 87
BspACI CCGC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 103, 190
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 103, 190
BtsIMutI CAGTG 1 cut(s) 246
CfoI GCGC 1 cut(s) 117
CviAII CATG 2 cut(s) 88, 283
CviJI RGCY 6 cut(s) 77, 85, 160, 277, 293, 305
CviKI_1 RGCY 6 cut(s) 77, 85, 160, 277, 293, 305
DdeI CTNAG 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 87
Eco53kI GAGCTC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 87
FaeI CATG 2 cut(s) 91, 286
FaiI YATR 5 cut(s) 89, 138, 186, 237, 284
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 2 cut(s) 87, 282
FauI CCCGC 1 cut(s) 53
FokI GGATG 2 cut(s) 110, 177
FriOI GRGCYC 1 cut(s) 87
GlaI GCGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 257
HaeII RGCGCY 1 cut(s) 118
HhaI GCGC 1 cut(s) 117
Hin1II CATG 2 cut(s) 91, 286
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HinfI GANTC 1 cut(s) 171
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 3 cut(s) 121, 175, 194
HpyCH4III ACNGT 1 cut(s) 250
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 2 cut(s) 91, 286
HspAI GCGC 1 cut(s) 115
LpnPI CCDG 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 1 cut(s) 40
MnlI CCTC 5 cut(s) 27, 41, 88, 117, 128
NlaIII CATG 2 cut(s) 91, 286
NmuCI GTSAC 1 cut(s) 244
PfeI GAWTC 1 cut(s) 171
Psp124BI GAGCTC 1 cut(s) 87
SacI GAGCTC 1 cut(s) 87
SduI GDGCHC 1 cut(s) 87
SetI ASST 5 cut(s) 38, 87, 162, 279, 295
SmlI CTYRAG 2 cut(s) 121, 155
SmoI CTYRAG 2 cut(s) 121, 155
Sse9I AATT 1 cut(s) 40
SsiI CCGC 1 cut(s) 60
SstI GAGCTC 1 cut(s) 87
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 3 cut(s) 5, 27, 213
TasI AATT 1 cut(s) 40
TfiI GAWTC 1 cut(s) 171
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 173, 208
TspRI CASTG 1 cut(s) 253
XapI RAATTY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.