RLG00000000941

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0020552
Physical Location & Seq
Reverse (-)
8222603 .. 8223482
880 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000941

Sequence Viewer

Length: 396 bp
ATGTCACATCTCCCCAACGATTCCAGCCTGATCCAACAACTGGGTCCTGCCCCATCTCCTCCTCTGCCTCCCACCGTCGTCGTCATTCATTCTGCAGCTGCCCAGATTAGATCCGAGAGCTTCCGGGCCCCAGCCCAAGTGAGACCTAAGAGTATGTCGAGCTCTGAGAGCAATGTGTTTGATGTGAGGTTGAATTTGAGAGGGAAAAAGGGTGGGGGTTTTAGAGAAGCCATTGAGCTCATGTTTGAGGATGATGACATCACCAAGCGCCTCTTCAAGATTGGAATGTATGGAGTTATTGATGTGCTTGAGCTTTTTGATGGAATCAAGGTTAATGTAAGGAAGTTGGGAATGAAAGGAAAATGTGAAAATTGGATGATACGAATTCCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.53

Weight (kDa)

9.46

Isoelectric Point (pI)

58.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020552)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0046721
rosa_laevigata RLG00000000941
rosa_roxburghii Rroxscaffold_5G00382490
rosa_rugosa Rorug05G0282300
rosa_samantha Rh2DG446300 Rh5BG319500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 40
AclWI GGATC 2 cut(s) 25, 105
AcsI RAATTY 2 cut(s) 193, 384
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 2 cut(s) 193, 277
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 5 cut(s) 98, 120, 162, 238, 313
AluI AGCT 5 cut(s) 98, 120, 162, 238, 313
Alw21I GWGCWC 2 cut(s) 164, 240
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 2 cut(s) 25, 105
AoxI GGCC 1 cut(s) 126
ApaI GGGCCC 1 cut(s) 130
ApeKI GCWGC 2 cut(s) 95, 98
ApoI RAATTY 2 cut(s) 193, 384
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 3 cut(s) 44, 126, 127
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 130
BanII GRGCYC 3 cut(s) 130, 164, 240
Bbv12I GWGCWC 2 cut(s) 164, 240
BbvI GCAGC 2 cut(s) 85, 107
BccI CCATC 2 cut(s) 61, 314
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 136
BfmI CTRYAG 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 271
BisI GCNGC 2 cut(s) 96, 99
BlsI GCNGC 2 cut(s) 97, 100
Bme1390I CCNGG 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 3 cut(s) 44, 126, 127
BmiI GGNNCC 3 cut(s) 45, 128, 129
BmrFI CCNGG 1 cut(s) 125
BmrI ACTGGG 1 cut(s) 50
BmuI ACTGGG 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 329
BpuMI CCSGG 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 178
BseGI GGATG 2 cut(s) 256, 381
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 2 cut(s) 48, 51
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 2 cut(s) 85, 107
BseYI CCCAGC 1 cut(s) 130
BshFI GGCC 1 cut(s) 128
BsiHKAI GWGCWC 2 cut(s) 164, 240
BsiSI CCGG 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 136
BsnI GGCC 1 cut(s) 128
Bso31I GGTCTC 1 cut(s) 136
Bsp120I GGGCCC 1 cut(s) 126
Bsp1286I GDGCHC 3 cut(s) 130, 164, 240
Bsp143I GATC 2 cut(s) 30, 110
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 3 cut(s) 45, 128, 129
BspMAI CTGCAG 1 cut(s) 97
BspPI GGATC 2 cut(s) 25, 105
BspTNI GGTCTC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 178
BsrI ACTGG 1 cut(s) 45
BssMI GATC 2 cut(s) 30, 110
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 278
BstDEI CTNAG 2 cut(s) 147, 165
BstF5I GGATG 2 cut(s) 256, 381
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 2 cut(s) 33, 113
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 2 cut(s) 30, 110
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 123
BstSFI CTRYAG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 85, 107
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 2 cut(s) 256, 381
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 3 cut(s) 44, 126, 127
CviAII CATG 1 cut(s) 241
CviJI RGCY 9 cut(s) 27, 98, 120, 128, 134, 162, 230, 238, 313
CviKI_1 RGCY 9 cut(s) 27, 98, 120, 128, 134, 162, 230, 238, 313
DdeI CTNAG 2 cut(s) 147, 165
DpnI GATC 2 cut(s) 32, 112
DpnII GATC 2 cut(s) 30, 110
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Ecl136II GAGCTC 2 cut(s) 162, 238
Eco24I GRGCYC 3 cut(s) 130, 164, 240
Eco31I GGTCTC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 2 cut(s) 162, 238
EcoICRI GAGCTC 2 cut(s) 162, 238
EcoO109I RGGNCCY 2 cut(s) 44, 127
EcoRI GAATTC 1 cut(s) 384
EcoT38I GRGCYC 3 cut(s) 130, 164, 240
FaeI CATG 1 cut(s) 244
FaiI YATR 3 cut(s) 155, 242, 291
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FatI CATG 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 96, 99
FokI GGATG 2 cut(s) 263, 388
FriOI GRGCYC 3 cut(s) 130, 164, 240
Fsp4HI GCNGC 2 cut(s) 96, 99
GlaI GCGC 1 cut(s) 269
GluI GCNGC 2 cut(s) 96, 99
GsaI CCCAGC 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 271
HaeIII GGCC 1 cut(s) 128
HapII CCGG 1 cut(s) 124
HhaI GCGC 1 cut(s) 270
Hin1II CATG 1 cut(s) 244
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HinfI GANTC 2 cut(s) 20, 324
HpaII CCGG 1 cut(s) 124
HphI GGTGA 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 115, 166
Hpy188III TCNNGA 1 cut(s) 277
Hpy99I CGWCG 2 cut(s) 80, 83
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 2 cut(s) 147, 165
Hsp92II CATG 1 cut(s) 244
HspAI GCGC 1 cut(s) 268
Kzo9I GATC 2 cut(s) 30, 110
LpnPI CCDG 7 cut(s) 26, 37, 41, 60, 116, 137, 144
Lsp1109I GCAGC 2 cut(s) 85, 107
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 32, 112
MboI GATC 2 cut(s) 30, 110
MboII GAAGA 1 cut(s) 265
MflI RGATCY 1 cut(s) 110
MhlI GDGCHC 3 cut(s) 130, 164, 240
MluCI AATT 3 cut(s) 193, 370, 384
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 7 cut(s) 69, 72, 78, 180, 194, 241, 281
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 168
NciI CCSGG 1 cut(s) 125
NdeII GATC 2 cut(s) 30, 110
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 3 cut(s) 45, 128, 129
NmuCI GTSAC 1 cut(s) 3
PfeI GAWTC 2 cut(s) 20, 324
PflMI CCANNNNNTGG 1 cut(s) 40
PkrI GCNGC 2 cut(s) 97, 100
PpuMI RGGWCCY 1 cut(s) 44
Psp124BI GAGCTC 2 cut(s) 164, 240
Psp5II RGGWCCY 1 cut(s) 44
PspFI CCCAGC 1 cut(s) 130
PspN4I GGNNCC 3 cut(s) 45, 128, 129
PspOMI GGGCCC 1 cut(s) 126
PspPI GGNCC 3 cut(s) 44, 126, 127
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 98
SacI GAGCTC 2 cut(s) 164, 240
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 2 cut(s) 96, 99
Sau3AI GATC 2 cut(s) 30, 110
Sau96I GGNCC 3 cut(s) 44, 126, 127
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 3 cut(s) 130, 164, 240
SetI ASST 8 cut(s) 100, 122, 148, 164, 191, 240, 315, 333
SfcI CTRYAG 1 cut(s) 93
SinI GGWCC 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 3 cut(s) 193, 370, 384
SstI GAGCTC 2 cut(s) 164, 240
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 158
TasI AATT 3 cut(s) 193, 370, 384
TfiI GAWTC 2 cut(s) 20, 324
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 2 cut(s) 95, 98
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 77, 368
Van91I CCANNNNNTGG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 2 cut(s) 193, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.