Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030166

Physical Location & Seq

Genomic Coordinates Forward (+)

60064400 .. 60065556

Gene Structure 1157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAAGCTAGATGAGAAGTGTTTGGTATATGTTATGTCTACCTTGGATGCACTTTATATAATGCAGAAGTTGGGATTCAAATTCGATTGTCAGAATTTATACCAGATTTTATCATCTTTGAGTAAATTAGAAGGTGATTTGAAGGATTTGGATAGGGTCAGGAATATAAATTGGGAAGAGAATGCTATGAAACTAAATTTTGTTCTTACGGAAGGCCTCAAGCTCGACAATAAGATGGCAGTGTGCTTCACCGACAGCCAATCAGGATCGCATCTATTAAAGTGGTTCATTCTTTGCTTTGAGCTTTGTCATTGTGAGACTAAACTGTTTTGCAAGGAAGCATTCGACGGACTTGGTGAACTGACTCAAAACTCATTGTCGCGCCTTATTTCTACATTGAGGATTAGTCCAGAGCTTCATTCAGTAGTTTTCATTCCCGATGCTAAGGTAAATCTGGCAATTACTGGTGCAATCTGTTTTCTGAAAGTTGTTGTAAATGATAGTCAAGTTGTGGAAGTCATTCAACGCCCAACAGATTTACAATGCTCCCAACTGGTGCTGTCTCCTAAAGGCTTGGGGACTGCGCTTGTGACAGTTCATGATATTGGGATTGCTCCTCCACTTGCATCTTCTGATGTGGTACAAGTTGCAGAGATTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0012505 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Big_2 RRM_1

Protein Analysis

220

Amino Acids

24.46

Weight (kDa)

5.23

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030166)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0056391
rosa_multiflora	Rmu_sc0000317.1_g000035

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	38
AccII	CGCG	1 cut(s)	382
AclWI	GGATC	1 cut(s)	274
AcsI	RAATTY	3 cut(s)	80, 94, 196
AfaI	GTAC	1 cut(s)	642
AgsI	TTSAA	3 cut(s)	79, 142, 524
AluBI	AGCT	4 cut(s)	7, 223, 304, 415
AluI	AGCT	4 cut(s)	7, 223, 304, 415
Alw26I	GTCTC	2 cut(s)	311, 567
AlwI	GGATC	1 cut(s)	274
AoxI	GGCC	1 cut(s)	214
ApoI	RAATTY	3 cut(s)	80, 94, 196
Asp700I	GAANNNNTTC	1 cut(s)	519
AspLEI	GCGC	2 cut(s)	384, 586
AsuHPI	GGTGA	3 cut(s)	146, 241, 368
BccI	CCATC	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	311, 567
BfaI	CTAG	1 cut(s)	8
BmsI	GCATC	4 cut(s)	37, 280, 430, 635
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	42
Bse1I	ACTGG	2 cut(s)	469, 558
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	52
BseNI	ACTGG	2 cut(s)	469, 558
BseRI	GAGGAG	1 cut(s)	606
Bsh1236I	CGCG	1 cut(s)	382
BshFI	GGCC	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	592
BsmAI	GTCTC	2 cut(s)	311, 567
BsmFI	GGGAC	1 cut(s)	592
BsmI	GAATGC	2 cut(s)	187, 341
BsnI	GGCC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	382
BspHI	TCATGA	1 cut(s)	598
BspPI	GGATC	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	469, 558
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	42
Bst4CI	ACNGT	2 cut(s)	327, 595
Bst6I	CTCTTC	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	382
BstHHI	GCGC	2 cut(s)	384, 586
BstKTI	GATC	1 cut(s)	269
BstMAI	GTCTC	2 cut(s)	311, 567
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	1 cut(s)	656
BstUI	CGCG	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	2 cut(s)	384, 586
Csp6I	GTAC	1 cut(s)	641
CviAII	CATG	1 cut(s)	599
CviJI	RGCY	7 cut(s)	7, 216, 223, 258, 304, 415, 573
CviKI_1	RGCY	7 cut(s)	7, 216, 223, 258, 304, 415, 573
CviQI	GTAC	1 cut(s)	641
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	1 cut(s)	602
FaiI	YATR	9 cut(s)	28, 30, 35, 57, 59, 100, 167, 188, 600
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	38
FokI	GGATG	1 cut(s)	59
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	2 cut(s)	383, 585
HaeIII	GGCC	1 cut(s)	216
HhaI	GCGC	2 cut(s)	384, 586
Hin1II	CATG	1 cut(s)	602
Hin6I	GCGC	2 cut(s)	382, 584
HinP1I	GCGC	2 cut(s)	382, 584
HinfI	GANTC	2 cut(s)	75, 364
HphI	GGTGA	3 cut(s)	146, 241, 368
Hpy166II	GTNNAC	2 cut(s)	39, 359
Hpy188I	TCNGA	3 cut(s)	93, 483, 634
Hpy188III	TCNNGA	5 cut(s)	160, 264, 410, 437, 599
Hpy8I	GTNNAC	2 cut(s)	39, 359
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	3 cut(s)	125, 136, 206
HpyCH4III	ACNGT	2 cut(s)	327, 595
HpyCH4V	TGCA	6 cut(s)	50, 64, 333, 470, 626, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	656
HpyF3I	CTNAG	1 cut(s)	444
Hsp92II	CATG	1 cut(s)	602
HspAI	GCGC	2 cut(s)	382, 584
Kzo9I	GATC	1 cut(s)	266
LmnI	GCTCC	2 cut(s)	551, 619
LpnPI	CCDG	7 cut(s)	116, 145, 249, 423, 440, 450, 539
LweI	GCATC	4 cut(s)	37, 280, 430, 635
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	2 cut(s)	188, 621
MluCI	AATT	6 cut(s)	80, 94, 125, 169, 196, 459
MlyI	GAGTC	1 cut(s)	358
MnlI	CCTC	3 cut(s)	227, 393, 627
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	1 cut(s)	278
Mva1269I	GAATGC	2 cut(s)	187, 341
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	656
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	602
NmuCI	GTSAC	1 cut(s)	589
PagI	TCATGA	1 cut(s)	598
PceI	AGGCCT	1 cut(s)	216
PctI	GAATGC	2 cut(s)	187, 341
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	1 cut(s)	75
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
SaqAI	TTAA	1 cut(s)	278
Sau3AI	GATC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	358
SetI	ASST	7 cut(s)	9, 44, 136, 225, 306, 417, 450
SfaNI	GCATC	4 cut(s)	37, 280, 430, 635
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	6 cut(s)	80, 94, 125, 169, 196, 459
SseBI	AGGCCT	1 cut(s)	216
SspMI	CTAG	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	327, 595
TaqI	TCGA	3 cut(s)	84, 225, 345
TasI	AATT	6 cut(s)	80, 94, 125, 169, 196, 459
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	589
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	6 cut(s)	17, 203, 277, 407, 421, 587
TspGWI	ACGGA	2 cut(s)	224, 363
TspRI	CASTG	1 cut(s)	246
XapI	RAATTY	3 cut(s)	80, 94, 196
XmiI	GTMKAC	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.