Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030166

Physical Location & Seq

Genomic Coordinates Forward (+)

60064400 .. 60065556

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33329

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAAGCTAGATGAGAAGTGTTTGGTATATGTTATGTCTACCTTGGATGCACTTTATATAATGCAGAAGTTGGGATTCAAATTCGATTGTCAGAATTTATACCAGATTTTATCATCTTTGAGTAAATTAGAAGGTGATTTGAAGGATTTGGATAGGGTCAGGAATATAAATTGGGAAGAGAATGCTATGAAACTAAATTTTGTTCTTACGGAAGGCCTCAAGCTCGACAATAAGATGGCAGTGTGCTTCACCGACAGCCAATCAGGATCGCATCTATTAAAGTGGTTCATTCTTTGCTTTGAGCTTTGTCATTGTGAGACTAAACTGTTTTGCAAGGAAGCATTCGACGGACTTGGTGAACTGACTCAAAACTCATTGTCGCGCCTTATTTCTACATTGAGGATTAGTCCAGAGCTTCATTCAGTAGTTTTCATTCCCGATGCTAAGGTAAATCTGGCAATTACTGGTGCAATCTGTTTTCTGAAAGTTGTTGTAAATGATAGTCAAGTTGTGGAAGTCATTCAACGCCCAACAGATTTACAATGCTCCCAACTGGTGCTGTCTCCTAAAGGCTTGGGGACTGCGCTTGTGACAGTTCATGATATTGGGATTGCTCCTCCACTTGCATCTTCTGATGTGGTACAAGTTGCAGAGATTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0012505 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Big_2 RRM_1

Protein Analysis

220

Amino Acids

24.46

Weight (kDa)

5.23

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030166)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0056391
rosa_multiflora	Rmu_sc0000317.1_g000035

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	38
AccII	CGCG	1 cut(s)	382
AclWI	GGATC	1 cut(s)	274
AcsI	RAATTY	3 cut(s)	80, 94, 196
AfaI	GTAC	1 cut(s)	642
AgsI	TTSAA	3 cut(s)	79, 142, 524
AluBI	AGCT	4 cut(s)	7, 223, 304, 415
AluI	AGCT	4 cut(s)	7, 223, 304, 415
Alw26I	GTCTC	2 cut(s)	311, 567
AlwI	GGATC	1 cut(s)	274
AoxI	GGCC	1 cut(s)	214
ApoI	RAATTY	3 cut(s)	80, 94, 196
Asp700I	GAANNNNTTC	1 cut(s)	519
AspLEI	GCGC	2 cut(s)	384, 586
AsuHPI	GGTGA	3 cut(s)	146, 241, 368
BccI	CCATC	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	311, 567
BfaI	CTAG	1 cut(s)	8
BmsI	GCATC	4 cut(s)	37, 280, 430, 635
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	42
Bse1I	ACTGG	2 cut(s)	469, 558
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	52
BseNI	ACTGG	2 cut(s)	469, 558
BseRI	GAGGAG	1 cut(s)	606
Bsh1236I	CGCG	1 cut(s)	382
BshFI	GGCC	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	592
BsmAI	GTCTC	2 cut(s)	311, 567
BsmFI	GGGAC	1 cut(s)	592
BsmI	GAATGC	2 cut(s)	187, 341
BsnI	GGCC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	382
BspHI	TCATGA	1 cut(s)	598
BspPI	GGATC	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	469, 558
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	42
Bst4CI	ACNGT	2 cut(s)	327, 595
Bst6I	CTCTTC	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	382
BstHHI	GCGC	2 cut(s)	384, 586
BstKTI	GATC	1 cut(s)	269
BstMAI	GTCTC	2 cut(s)	311, 567
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	1 cut(s)	656
BstUI	CGCG	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	2 cut(s)	384, 586
Csp6I	GTAC	1 cut(s)	641
CviAII	CATG	1 cut(s)	599
CviJI	RGCY	7 cut(s)	7, 216, 223, 258, 304, 415, 573
CviKI_1	RGCY	7 cut(s)	7, 216, 223, 258, 304, 415, 573
CviQI	GTAC	1 cut(s)	641
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	1 cut(s)	602
FaiI	YATR	9 cut(s)	28, 30, 35, 57, 59, 100, 167, 188, 600
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	38
FokI	GGATG	1 cut(s)	59
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	2 cut(s)	383, 585
HaeIII	GGCC	1 cut(s)	216
HhaI	GCGC	2 cut(s)	384, 586
Hin1II	CATG	1 cut(s)	602
Hin6I	GCGC	2 cut(s)	382, 584
HinP1I	GCGC	2 cut(s)	382, 584
HinfI	GANTC	2 cut(s)	75, 364
HphI	GGTGA	3 cut(s)	146, 241, 368
Hpy166II	GTNNAC	2 cut(s)	39, 359
Hpy188I	TCNGA	3 cut(s)	93, 483, 634
Hpy188III	TCNNGA	5 cut(s)	160, 264, 410, 437, 599
Hpy8I	GTNNAC	2 cut(s)	39, 359
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	3 cut(s)	125, 136, 206
HpyCH4III	ACNGT	2 cut(s)	327, 595
HpyCH4V	TGCA	6 cut(s)	50, 64, 333, 470, 626, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	656
HpyF3I	CTNAG	1 cut(s)	444
Hsp92II	CATG	1 cut(s)	602
HspAI	GCGC	2 cut(s)	382, 584
Kzo9I	GATC	1 cut(s)	266
LmnI	GCTCC	2 cut(s)	551, 619
LpnPI	CCDG	7 cut(s)	116, 145, 249, 423, 440, 450, 539
LweI	GCATC	4 cut(s)	37, 280, 430, 635
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	2 cut(s)	188, 621
MluCI	AATT	6 cut(s)	80, 94, 125, 169, 196, 459
MlyI	GAGTC	1 cut(s)	358
MnlI	CCTC	3 cut(s)	227, 393, 627
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	1 cut(s)	278
Mva1269I	GAATGC	2 cut(s)	187, 341
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	656
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	602
NmuCI	GTSAC	1 cut(s)	589
PagI	TCATGA	1 cut(s)	598
PceI	AGGCCT	1 cut(s)	216
PctI	GAATGC	2 cut(s)	187, 341
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	1 cut(s)	75
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
SaqAI	TTAA	1 cut(s)	278
Sau3AI	GATC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	358
SetI	ASST	7 cut(s)	9, 44, 136, 225, 306, 417, 450
SfaNI	GCATC	4 cut(s)	37, 280, 430, 635
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	6 cut(s)	80, 94, 125, 169, 196, 459
SseBI	AGGCCT	1 cut(s)	216
SspMI	CTAG	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	327, 595
TaqI	TCGA	3 cut(s)	84, 225, 345
TasI	AATT	6 cut(s)	80, 94, 125, 169, 196, 459
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	589
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	6 cut(s)	17, 203, 277, 407, 421, 587
TspGWI	ACGGA	2 cut(s)	224, 363
TspRI	CASTG	1 cut(s)	246
XapI	RAATTY	3 cut(s)	80, 94, 196
XmiI	GTMKAC	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.