Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025010

Physical Location & Seq

Genomic Coordinates Forward (+)

76220309 .. 76221425

Gene Structure 1117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGTCTTCCCAACAATGGTATAAAACATGCATGGAAGGTGATTTTGAGGAAGACATTGATGTGCAAGTTACTGTTGCATCTCTCTGTCTAAAGGATGCTGAAGAGATCACTAAAGGTATTCCAAATGCAATTCCAGTTCAACTTGATGTGTCTGACACTAGTACTCTTCACAAGTACATATCTGAGGCTGAAGTTGTTATAAGCTTACTGCCTGCTTTGTCACATTACTGTAGCAACTGCATGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

82

Amino Acids

9.15

Weight (kDa)

4.22

Isoelectric Point (pI)

56.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sacchrp_dh_NADP	PF03435	18 - 75	1.9e-06	Saccharopine dehydrogenase NADP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025010)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0070481
rosa_samantha	Rh5CG564700
rosa_wichuraiana	Rw2G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AcuI	CTGAAG	2 cut(s)	120, 210
AfaI	GTAC	2 cut(s)	163, 176
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	140
AhlI	ACTAGT	1 cut(s)	158
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	57
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	229
BmcAI	AGTACT	1 cut(s)	163
BmsI	GCATC	2 cut(s)	85, 86
BpiI	GAAGAC	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	134
BssMI	GATC	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	73, 230
Bst6I	CTCTTC	2 cut(s)	96, 171
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	105
BstNSI	RCATGY	2 cut(s)	30, 244
BstSFI	CTRYAG	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	162, 175
CviAII	CATG	3 cut(s)	27, 31, 241
CviJI	RGCY	2 cut(s)	188, 204
CviKI_1	RGCY	2 cut(s)	188, 204
CviQI	GTAC	2 cut(s)	162, 175
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
Eam1104I	CTCTTC	2 cut(s)	96, 171
EarI	CTCTTC	2 cut(s)	96, 171
Eco57I	CTGAAG	2 cut(s)	120, 210
EcoT22I	ATGCAT	1 cut(s)	32
FaeI	CATG	3 cut(s)	30, 34, 244
FaiI	YATR	6 cut(s)	21, 28, 32, 179, 200, 242
FatI	CATG	3 cut(s)	26, 30, 240
FokI	GGATG	1 cut(s)	107
FspBI	CTAG	1 cut(s)	159
Hin1II	CATG	3 cut(s)	30, 34, 244
HindIII	AAGCTT	1 cut(s)	202
HphI	GGTGA	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	154, 184
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	2 cut(s)	73, 230
HpyCH4V	TGCA	5 cut(s)	30, 64, 77, 128, 240
HpyF3I	CTNAG	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	30, 34, 244
Kzo9I	GATC	1 cut(s)	105
LpnPI	CCDG	2 cut(s)	147, 225
LweI	GCATC	2 cut(s)	85, 86
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	67, 219
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	3 cut(s)	62, 113, 158
MluCI	AATT	1 cut(s)	129
MnlI	CCTC	2 cut(s)	40, 178
Mph1103I	ATGCAT	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	59
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	3 cut(s)	30, 34, 244
NmuCI	GTSAC	1 cut(s)	219
NsiI	ATGCAT	1 cut(s)	32
NspI	RCATGY	2 cut(s)	30, 244
PsiI	TTATAA	1 cut(s)	200
RsaI	GTAC	2 cut(s)	163, 176
RsaNI	GTAC	2 cut(s)	162, 175
RseI	CAYNNNNRTG	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	105
ScaI	AGTACT	1 cut(s)	163
SetI	ASST	3 cut(s)	40, 118, 206
SfaNI	GCATC	2 cut(s)	85, 86
SfcI	CTRYAG	1 cut(s)	229
SgeI	CNNG	8 cut(s)	39, 43, 77, 146, 155, 171, 184, 224
SmiMI	CAYNNNNRTG	1 cut(s)	59
SpeI	ACTAGT	1 cut(s)	158
Sse9I	AATT	1 cut(s)	129
SspMI	CTAG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	73, 230
TasI	AATT	1 cut(s)	129
TatI	WGTACW	2 cut(s)	161, 174
TseFI	GTSAC	1 cut(s)	219
Tsp45I	GTSAC	1 cut(s)	219
XceI	RCATGY	2 cut(s)	30, 244
XspI	CTAG	1 cut(s)	159
ZrmI	AGTACT	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.