Rw2G030390

Alpha-aminoadipic semialdehyde

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
49721348 .. 49722735
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G030390.1

Sequence Viewer

Length: 420 bp
ATGGAAGGTGATTTTGAGGAAGACATTGATGTGCAAGTTACTGTTGCATCTCTCTATCTAAAGGATGCTGAAGAGATCACTAAAGGTATTCCAAATGCAATTCCAGTTCAACTTGATGTGTCTGACACTAGTACTCTTCACAAGTATATATCTGAGGTAACTACTTTTCTGAAGTACAGTGAACTGCTCAAAAGGCACCTTGTCACTGCTAGCTATGTTGATGATGCCACGTCAGAGCTAAATGAAAAGGCAAAGACTGCCGGTATTACGATTCTTGGCGAGCTGGGATTGGACCCTGGGGTAGATCACATGATGGCAATGAAGATGATCAACCAAGCACATGTTCGTAAGGGGTTTTCAGATTCTCATTATGAAGCCTCTAGTGAAGCCTCTGATGCTTTGACAATAGAGCAACGCTGA

Protein Analysis

139

Amino Acids

15.34

Weight (kDa)

4.59

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025010)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0070481
rosa_samantha Rh5CG564700
rosa_wichuraiana Rw2G030390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 195
AcuI CTGAAG 2 cut(s) 90, 191
AfaI GTAC 2 cut(s) 133, 176
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 1 cut(s) 110
AhlI ACTAGT 1 cut(s) 128
AjiI CACGTC 1 cut(s) 231
AjnI CCWGG 1 cut(s) 295
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AluBI AGCT 3 cut(s) 213, 238, 283
AluI AGCT 3 cut(s) 213, 238, 283
AspS9I GGNCC 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 20
AsuNHI GCTAGC 1 cut(s) 209
AvaII GGWCC 1 cut(s) 292
BanI GGYRCC 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 27
BccI CCATC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 297
BclI TGATCA 1 cut(s) 327
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 3 cut(s) 129, 210, 381
BmcAI AGTACT 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 297
Bme18I GGWCC 1 cut(s) 292
BmgBI CACGTC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 2 cut(s) 197, 294
BmrFI CCNGG 1 cut(s) 297
BmsI GCATC 4 cut(s) 55, 56, 214, 385
BmtI GCTAGC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 295, 296
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 324
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 295, 296
BseGI GGATG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 104
BseYI CCCAGC 1 cut(s) 283
BshNI GGYRCC 1 cut(s) 195
BsiSI CCGG 1 cut(s) 261
Bsp143I GATC 3 cut(s) 75, 304, 327
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 197, 294
BspOI GCTAGC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 324
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 295, 296
BssMI GATC 3 cut(s) 75, 304, 327
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 2 cut(s) 43, 179
Bst6I CTCTTC 2 cut(s) 66, 141
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 211, 281
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 3 cut(s) 78, 307, 330
BstMBI GATC 3 cut(s) 75, 304, 327
BstMWI GCNNNNNNNGC 3 cut(s) 193, 257, 395
BstNI CCWGG 1 cut(s) 297
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 295
BstV2I GAAGAC 1 cut(s) 27
BtrI CACGTC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 184, 204
Cac8I GCNNGC 2 cut(s) 211, 281
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 2 cut(s) 132, 175
CviAII CATG 2 cut(s) 310, 341
CviJI RGCY 5 cut(s) 213, 238, 283, 377, 389
CviKI_1 RGCY 5 cut(s) 213, 238, 283, 377, 389
CviQI GTAC 2 cut(s) 132, 175
DdeI CTNAG 1 cut(s) 153
DpnI GATC 3 cut(s) 77, 306, 329
DpnII GATC 3 cut(s) 75, 304, 327
Eam1104I CTCTTC 2 cut(s) 66, 141
EarI CTCTTC 2 cut(s) 66, 141
Eco47I GGWCC 1 cut(s) 292
Eco57I CTGAAG 2 cut(s) 90, 191
EcoRII CCWGG 1 cut(s) 295
FaeI CATG 2 cut(s) 313, 344
FaiI YATR 6 cut(s) 147, 149, 216, 311, 342, 372
FatI CATG 2 cut(s) 309, 340
FbaI TGATCA 1 cut(s) 327
FokI GGATG 1 cut(s) 77
FspBI CTAG 3 cut(s) 129, 210, 381
GsaI CCCAGC 1 cut(s) 287
HapII CCGG 1 cut(s) 261
Hin1II CATG 2 cut(s) 313, 344
HinfI GANTC 2 cut(s) 271, 362
HpaII CCGG 1 cut(s) 261
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 6 cut(s) 124, 154, 171, 235, 361, 394
Hpy8I GTNNAC 1 cut(s) 182
HpyCH4III ACNGT 2 cut(s) 43, 179
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 3 cut(s) 34, 47, 98
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 257, 395
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 2 cut(s) 313, 344
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 3 cut(s) 75, 304, 327
LpnPI CCDG 5 cut(s) 117, 269, 274, 282, 309
LweI GCATC 4 cut(s) 55, 56, 214, 385
MaeI CTAG 3 cut(s) 129, 210, 381
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 3 cut(s) 37, 157, 202
MalI GATC 3 cut(s) 77, 306, 329
MboI GATC 3 cut(s) 75, 304, 327
MboII GAAGA 4 cut(s) 32, 83, 128, 334
MluCI AATT 1 cut(s) 99
MnlI CCTC 4 cut(s) 10, 148, 388, 400
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 3 cut(s) 193, 257, 395
NdeII GATC 3 cut(s) 75, 304, 327
NheI GCTAGC 1 cut(s) 209
NlaIII CATG 2 cut(s) 313, 344
NlaIV GGNNCC 2 cut(s) 197, 294
NmuCI GTSAC 1 cut(s) 202
NspI RCATGY 1 cut(s) 344
PasI CCCWGGG 1 cut(s) 296
PciI ACATGT 1 cut(s) 340
PfeI GAWTC 2 cut(s) 271, 362
PscI ACATGT 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 295
PspFI CCCAGC 1 cut(s) 283
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 197, 294
PspPI GGNCC 1 cut(s) 292
RsaI GTAC 2 cut(s) 133, 176
RsaNI GTAC 2 cut(s) 132, 175
RseI CAYNNNNRTG 1 cut(s) 29
Sau3AI GATC 3 cut(s) 75, 304, 327
Sau96I GGNCC 1 cut(s) 292
ScaI AGTACT 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 297
SetI ASST 8 cut(s) 10, 88, 159, 201, 215, 233, 240, 285
SfaNI GCATC 4 cut(s) 55, 56, 214, 385
SinI GGWCC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 29
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 1 cut(s) 99
SspMI CTAG 3 cut(s) 129, 210, 381
StyD4I CCNGG 1 cut(s) 295
TaaI ACNGT 2 cut(s) 43, 179
TaiI ACGT 1 cut(s) 233
TasI AATT 1 cut(s) 99
TatI WGTACW 2 cut(s) 131, 174
TfiI GAWTC 2 cut(s) 271, 362
TscAI CASTG 2 cut(s) 184, 211
TseFI GTSAC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 3 cut(s) 258, 335, 387
TspRI CASTG 2 cut(s) 184, 211
VpaK11BI GGWCC 1 cut(s) 292
XceI RCATGY 1 cut(s) 344
XspI CTAG 3 cut(s) 129, 210, 381
ZrmI AGTACT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.