Rh5CG564700

Alpha-aminoadipic semialdehyde

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
79752857 .. 79755452
2596 bp
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UTR
Exon/CDS
Intron
Rh5CG564700.1

Sequence Viewer

Length: 249 bp
ATGTCTTCCCAACAATGGTATAAAACATGCATGGAAGGTGATTTTGAGGAAGACATTGATGTGCAAGTTACTGTTGCATCTCTCTATCTAAAGGATGCTGAAGAGATCACTAAAGGTATTCCAAATGCAATTCCAGTTCAGCTTGATGTGTCTGACACTAGTACTCTTCACAAGTATATATCTGAGATACCTACTCCTTGGGTGGTTGCTTCCCTGATTCCAATTGTTGGTGGAGTGGGACTGGCATAA

Protein Analysis

82

Amino Acids

8.95

Weight (kDa)

4.13

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025010)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0070481
rosa_samantha Rh5CG564700
rosa_wichuraiana Rw2G030390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 15, 227
AhlI ACTAGT 1 cut(s) 158
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 57
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 1 cut(s) 159
BmcAI AGTACT 1 cut(s) 163
BmsI GCATC 2 cut(s) 85, 86
BpiI GAAGAC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 227
Bse1I ACTGG 2 cut(s) 134, 246
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 2 cut(s) 15, 227
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 2 cut(s) 134, 246
BslI CCNNNNNNNGG 2 cut(s) 15, 227
Bsp143I GATC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 175
BsrI ACTGG 2 cut(s) 134, 246
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 2 cut(s) 96, 171
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstNSI RCATGY 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 100
Csp6I GTAC 1 cut(s) 162
CviAII CATG 2 cut(s) 27, 31
CviJI RGCY 1 cut(s) 142
CviKI_1 RGCY 1 cut(s) 142
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 183
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 96, 171
EarI CTCTTC 2 cut(s) 96, 171
Eco130I CCWWGG 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 197
EcoT22I ATGCAT 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 2 cut(s) 30, 34
FaiI YATR 6 cut(s) 21, 28, 32, 177, 179, 247
FatI CATG 2 cut(s) 26, 30
FokI GGATG 1 cut(s) 107
FspBI CTAG 1 cut(s) 159
Hin1II CATG 2 cut(s) 30, 34
HinfI GANTC 1 cut(s) 217
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 2 cut(s) 154, 184
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 4 cut(s) 30, 64, 77, 128
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 2 cut(s) 30, 34
Kzo9I GATC 1 cut(s) 105
LpnPI CCDG 3 cut(s) 147, 227, 227
LweI GCATC 2 cut(s) 85, 86
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 3 cut(s) 62, 113, 158
MfeI CAATTG 1 cut(s) 222
MluCI AATT 2 cut(s) 129, 222
MnlI CCTC 1 cut(s) 40
Mph1103I ATGCAT 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 59
MunI CAATTG 1 cut(s) 222
NdeII GATC 1 cut(s) 105
NlaIII CATG 2 cut(s) 30, 34
NsiI ATGCAT 1 cut(s) 32
NspI RCATGY 1 cut(s) 30
PfeI GAWTC 1 cut(s) 217
PflMI CCANNNNNTGG 1 cut(s) 227
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
RseI CAYNNNNRTG 1 cut(s) 59
Sau3AI GATC 1 cut(s) 105
ScaI AGTACT 1 cut(s) 163
SetI ASST 4 cut(s) 40, 118, 144, 193
SfaNI GCATC 2 cut(s) 85, 86
SgeI CNNG 9 cut(s) 39, 43, 77, 146, 155, 171, 184, 210, 226
SmiMI CAYNNNNRTG 1 cut(s) 59
SpeI ACTAGT 1 cut(s) 158
Sse9I AATT 2 cut(s) 129, 222
SspMI CTAG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 1 cut(s) 73
TasI AATT 2 cut(s) 129, 222
TatI WGTACW 1 cut(s) 161
TfiI GAWTC 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 227
XceI RCATGY 1 cut(s) 30
XspI CTAG 1 cut(s) 159
ZrmI AGTACT 1 cut(s) 163
Zsp2I ATGCAT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.