Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024337

Physical Location & Seq

Genomic Coordinates Forward (+)

81339886 .. 81340736

Gene Structure 851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAGAAGCGAAAGCCCTGAGATTCCAATCCATGGGGAACCGAAAAGAACGACGTCGTCTTGCCGCCATGTCCAACTCTGGTCGCAGAGTCAAGCTCGATCTCTTCGCCGAACCCCTGGAGGAGATTTGGGTGGCTCTGCTGAACATGAGGGAGTAGGAGGAGAAGTACATTCGAAAGGCGAGTCTGGGTTACCCAATTCACCATCTTCTTCTTCAGGTGGGTTCCGTCAGTTTTCTTCAAAAAAAAGGACTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

85

Amino Acids

9.07

Weight (kDa)

10.0

Isoelectric Point (pI)

95.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024337)

Species	Orthologous Gene IDs
malus_domestica	MD03G1035500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0075561
rosa_samantha	Rh5CG542200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	56
AccB7I	CCANNNNNTGG	1 cut(s)	32
AciI	CCGC	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	240
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AsuHPI	GGTGA	1 cut(s)	192
AsuII	TTCGAA	1 cut(s)	173
BccI	CCATC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	117
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	39, 224
BmrFI	CCNGG	1 cut(s)	117
BplI	GAGNNNNNCTC	2 cut(s)	79, 111
BpmI	CTGGAG	1 cut(s)	138
Bpu14I	TTCGAA	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	31, 115
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse8I	GATNNNNATC	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	31, 115
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	9
BseRI	GAGGAG	2 cut(s)	135, 174
BslI	CCNNNNNNNGG	1 cut(s)	32
Bsp119I	TTCGAA	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	98
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	39, 224
BspT104I	TTCGAA	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	31, 115
BssMI	GATC	1 cut(s)	98
BssNI	GRCGYC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	117
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	173
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	31
BstEII	GGTNACC	1 cut(s)	189
BstKTI	GATC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	117
BstPI	GGTNACC	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	115
BtgI	CCRYGG	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	3 cut(s)	32, 68, 146
CviJI	RGCY	3 cut(s)	15, 95, 135
CviKI_1	RGCY	3 cut(s)	15, 95, 135
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	198
Eco91I	GGTNACC	1 cut(s)	189
EcoO65I	GGTNACC	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	3 cut(s)	35, 71, 149
FaiI	YATR	3 cut(s)	33, 69, 147
FatI	CATG	3 cut(s)	31, 67, 145
Fnu4HI	GCNGC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	64
GluI	GCNGC	1 cut(s)	64
GsuI	CTGGAG	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	3 cut(s)	35, 71, 149
HinfI	GANTC	3 cut(s)	22, 88, 182
HphI	GGTGA	1 cut(s)	192
Hpy99I	CGWCG	2 cut(s)	55, 58
HpyCH4IV	ACGT	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	53
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	3 cut(s)	35, 71, 149
Kzo9I	GATC	1 cut(s)	98
LpnPI	CCDG	6 cut(s)	30, 64, 102, 129, 171, 201
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	1 cut(s)	100
MboI	GATC	1 cut(s)	98
MboII	GAAGA	5 cut(s)	95, 198, 201, 204, 228
MluCI	AATT	1 cut(s)	196
MlyI	GAGTC	2 cut(s)	97, 191
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	113, 142, 152
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	98
NlaIII	CATG	3 cut(s)	35, 71, 149
NlaIV	GGNNCC	2 cut(s)	39, 224
NspV	TTCGAA	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	22
PflFI	GACNNNGTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	2 cut(s)	96, 190
PpsI	GAGTC	2 cut(s)	96, 190
Psp6I	CCWGG	1 cut(s)	115
PspEI	GGTNACC	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	39, 224
PsyI	GACNNNGTC	1 cut(s)	55
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	1 cut(s)	98
SchI	GAGTC	2 cut(s)	97, 191
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	3 cut(s)	56, 97, 220
SfuI	TTCGAA	1 cut(s)	173
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	31
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	97, 173
TasI	AATT	1 cut(s)	196
TatI	WGTACW	1 cut(s)	166
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	22
TspGWI	ACGGA	1 cut(s)	215
Tth111I	GACNNNGTC	1 cut(s)	55
Van91I	CCANNNNNTGG	1 cut(s)	32
ZraI	GACGTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.