Rh5CG542200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0024337
Physical Location & Seq
Forward (+)
75718941 .. 75719611
671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG542200.1

Sequence Viewer

Length: 387 bp
ATGGGGAACCGAAAAGAACGACGTCGTCTTGCCGCTATGTCCAACTCTGGTCGCAGAGTCAAGCTCGATCTCTTCGCCGAACCCCCTGGAGGAGATTTGGGTGGCTCTGCTGAACATGAGGGAGTAGGAGGAGAAGTACATTCGAAAGGCGAGTCTGGGTTACCCAATTCACCATCTTCTTCTTCAGGTGGGTTCCGTCAGTTTTCTTCAAAAAAAGGACTTTGTAGAGAGGACATGTGTGCCCAACATTATGTTGTTCTCGGTGGAATTATGGAAACTATAATGTACAAGACATTGTTATGTTGTTTGCCCTCCCTCCCCCCAAAGAATTTGTTTTCGGACTGTAGGTTGGAGGACATTCACTGCTCGGCCACAGTGAAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.78

Weight (kDa)

8.58

Isoelectric Point (pI)

59.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024337)

Species Orthologous Gene IDs
malus_domestica MD03G1035500.v1.1
rosa_chinensis RchiOBHm_Chr5g0075561
rosa_samantha Rh5CG542200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 25
AciI CCGC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 2 cut(s) 138, 287
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 1 cut(s) 210
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
AoxI GGCC 1 cut(s) 369
ApoI RAATTY 1 cut(s) 328
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AsuHPI GGTGA 1 cut(s) 162
AsuII TTCGAA 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 244
BccI CCATC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 343
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 87
BmiI GGNNCC 2 cut(s) 8, 194
BmrFI CCNGG 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 48, 80
BpmI CTGGAG 1 cut(s) 108
Bpu14I TTCGAA 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 89
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 89
BseRI GAGGAG 2 cut(s) 105, 144
BseSI GKGCMC 1 cut(s) 244
BshFI GGCC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 89
BsnI GGCC 1 cut(s) 371
Bsp119I TTCGAA 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 244
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 1 cut(s) 67
BspACI CCGC 1 cut(s) 33
BspANI GGCC 1 cut(s) 371
BspLI GGNNCC 2 cut(s) 8, 194
BspT104I TTCGAA 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 1 cut(s) 67
BssNI GRCGYC 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 344, 376
Bst6I CTCTTC 1 cut(s) 77
BstACI GRCGYC 1 cut(s) 22
BstAUI TGTACA 1 cut(s) 285
BstBI TTCGAA 1 cut(s) 143
BstEII GGTNACC 1 cut(s) 159
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstNI CCWGG 1 cut(s) 87
BstNSI RCATGY 1 cut(s) 238
BstPI GGTNACC 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 343
BstSLI GKGCMC 1 cut(s) 244
BsuRI GGCC 1 cut(s) 371
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 361, 381
Csp6I GTAC 2 cut(s) 137, 286
CviAII CATG 2 cut(s) 116, 235
CviJI RGCY 3 cut(s) 64, 105, 371
CviKI_1 RGCY 3 cut(s) 64, 105, 371
CviQI GTAC 2 cut(s) 137, 286
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 159
EcoO65I GGTNACC 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 85
FaeI CATG 2 cut(s) 119, 238
FaiI YATR 8 cut(s) 38, 117, 236, 252, 272, 281, 301, 385
FatI CATG 2 cut(s) 115, 234
Fnu4HI GCNGC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 371
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 2 cut(s) 119, 238
HinfI GANTC 2 cut(s) 57, 152
HphI GGTGA 1 cut(s) 162
Hpy188I TCNGA 1 cut(s) 340
Hpy99I CGWCG 2 cut(s) 24, 27
HpyCH4III ACNGT 2 cut(s) 344, 376
HpyCH4IV ACGT 1 cut(s) 22
HpySE526I ACGT 1 cut(s) 22
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 2 cut(s) 119, 238
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 5 cut(s) 33, 72, 99, 141, 171
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 1 cut(s) 159
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 5 cut(s) 64, 168, 171, 174, 198
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 4 cut(s) 166, 267, 328, 380
MlyI GAGTC 2 cut(s) 66, 161
MmeI TCCRAC 2 cut(s) 66, 330
MnlI CCTC 7 cut(s) 83, 112, 122, 223, 322, 326, 346
MslI CAYNNNNRTG 1 cut(s) 298
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
NdeII GATC 1 cut(s) 67
NlaIII CATG 2 cut(s) 119, 238
NlaIV GGNNCC 2 cut(s) 8, 194
NmeAIII GCCGAG 1 cut(s) 347
NspI RCATGY 1 cut(s) 238
NspV TTCGAA 1 cut(s) 143
PciI ACATGT 1 cut(s) 234
PflFI GACNNNGTC 1 cut(s) 24
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 2 cut(s) 65, 160
PpsI GAGTC 2 cut(s) 65, 160
PscI ACATGT 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 85
PspEI GGTNACC 1 cut(s) 159
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 2 cut(s) 8, 194
PsyI GACNNNGTC 1 cut(s) 24
RsaI GTAC 2 cut(s) 138, 287
RsaNI GTAC 2 cut(s) 137, 286
RseI CAYNNNNRTG 1 cut(s) 298
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 1 cut(s) 67
SchI GAGTC 2 cut(s) 66, 161
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 1 cut(s) 244
SetI ASST 4 cut(s) 25, 66, 190, 350
SfcI CTRYAG 1 cut(s) 343
SfuI TTCGAA 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 298
Sse9I AATT 4 cut(s) 166, 267, 328, 380
SsiI CCGC 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 344, 376
TaiI ACGT 1 cut(s) 25
TaqI TCGA 2 cut(s) 66, 143
TasI AATT 4 cut(s) 166, 267, 328, 380
TatI WGTACW 2 cut(s) 136, 285
TauI GCSGC 1 cut(s) 35
TscAI CASTG 2 cut(s) 368, 381
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 2 cut(s) 368, 381
Tth111I GACNNNGTC 1 cut(s) 24
XapI RAATTY 1 cut(s) 328
XceI RCATGY 1 cut(s) 238
ZraI GACGTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.