RchiOBHm_Chr5g0081971

CMP-sialic acid transporter

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
87868905 .. 87872430
3526 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 147 bp
ATGGAGTACAGGAAGCTCAAAGATCAGGATGAAAATGGAAATTCAGCTGCCGACGACATAAAAAATTTACGGGGAAATCCGCTTTCTATTGCACCAACTATGGGAGATGGGTCAATAGACCAAAAATGGAAGCACAAGTATGATTGA

Protein Analysis

48

Amino Acids

5.46

Weight (kDa)

5.65

Isoelectric Point (pI)

12.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030146)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0081971 RchiOBHm_Chr5g0082291

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AcsI RAATTY 2 cut(s) 40, 64
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 101
AluBI AGCT 2 cut(s) 16, 47
AluI AGCT 2 cut(s) 16, 47
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 2 cut(s) 40, 64
BbvI GCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 101
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 101
Bsp143I GATC 1 cut(s) 22
BspACI CCGC 1 cut(s) 80
BssMI GATC 1 cut(s) 22
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 34
Csp6I GTAC 1 cut(s) 7
CviJI RGCY 2 cut(s) 16, 47
CviKI_1 RGCY 2 cut(s) 16, 47
CviQI GTAC 1 cut(s) 7
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
FaiI YATR 3 cut(s) 59, 101, 141
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
Hpy188III TCNNGA 1 cut(s) 26
Hpy99I CGWCG 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 92
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 1 cut(s) 11
Lsp1109I GCAGC 1 cut(s) 34
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MluCI AATT 2 cut(s) 40, 64
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 47
NdeII GATC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 22
SetI ASST 2 cut(s) 18, 49
SgeI CNNG 3 cut(s) 22, 38, 83
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 2 cut(s) 40, 64
SsiI CCGC 1 cut(s) 80
TasI AATT 2 cut(s) 40, 64
TatI WGTACW 1 cut(s) 6
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 45
XapI RAATTY 2 cut(s) 40, 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.