RchiOBHm_Chr5g0082291

CMP-sialic acid transporter

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
88251143 .. 88255108
3966 bp
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UTR
Exon/CDS
Intron
PRQ35650

Sequence Viewer

Length: 147 bp
ATGGAGTACCGGAAGCTCAAGGATCAGGATGAAAATGGAAATTCAGCTGCTGACGACATAAAAAATTTACGGGGAAATCCGCTTTCTATTGAGCCAACTATGAGAGAGGGGCCAATAGACCGAAAATGGAAGCACAAGTATGATTGA

Protein Analysis

48

Amino Acids

5.67

Weight (kDa)

6.56

Isoelectric Point (pI)

18.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030146)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0081971 RchiOBHm_Chr5g0082291

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AclWI GGATC 1 cut(s) 30
AcsI RAATTY 2 cut(s) 40, 64
AfaI GTAC 1 cut(s) 8
AluBI AGCT 2 cut(s) 16, 47
AluI AGCT 2 cut(s) 16, 47
AlwI GGATC 1 cut(s) 30
AlwNI CAGNNNCTG 1 cut(s) 50
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 2 cut(s) 40, 64
AspS9I GGNCC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 34
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 9
BseGI GGATG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 34
BshFI GGCC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 10
BsnI GGCC 1 cut(s) 112
Bsp143I GATC 1 cut(s) 22
BspACI CCGC 1 cut(s) 80
BspANI GGCC 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 111
BspPI GGATC 1 cut(s) 30
BssMI GATC 1 cut(s) 22
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 112
BtsCI GGATG 1 cut(s) 34
CaiI CAGNNNCTG 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 7
CviJI RGCY 4 cut(s) 16, 47, 94, 112
CviKI_1 RGCY 4 cut(s) 16, 47, 94, 112
CviQI GTAC 1 cut(s) 7
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
FaiI YATR 3 cut(s) 59, 101, 141
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 112
HapII CCGG 1 cut(s) 10
HpaII CCGG 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 26
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 2 cut(s) 11, 23
Lsp1109I GCAGC 1 cut(s) 34
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MluCI AATT 2 cut(s) 40, 64
MnlI CCTC 1 cut(s) 100
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 1 cut(s) 10
NdeII GATC 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 111
PkrI GCNGC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 110
PstNI CAGNNNCTG 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 110
SetI ASST 2 cut(s) 18, 49
SgeI CNNG 4 cut(s) 22, 31, 38, 83
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 2 cut(s) 40, 64
SsiI CCGC 1 cut(s) 80
TaqII GACCGA 1 cut(s) 135
TasI AATT 2 cut(s) 40, 64
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 45
XapI RAATTY 2 cut(s) 40, 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.