RchiOBHm_Chr4g0405461

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0024936
Physical Location & Seq
Forward (+)
26013908 .. 26015830
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
ATGCCATCCTTTCTCTCTCTCTCTCTTCCCCGATCTATTTCACTCTCTGAAGTCTTAACTAACTTCACTACCATGGCCCCTTCGACACCGCCGACGGCGTCTACGACGTCACCTGGTCCGAATCTCACGACTCCCTACGCGTCGCCTCCATCACCAAGGCCTCCGTCAAGCTCTACGACCTCGCCTTCCCGCCGACCTCCAACCTCCTCCGCTCCCTCTTCAATTCTACTCGTGCTTCATGTATGGTTCTCTCCACCCTCAATATCTATTAGCACCTGTTCACAAATTCCTAGCAAACATTCTCTGATTCATTATGGGGAGAAAGAAGAAGTTCATCGACAAGAAAAAGGCTACTTTCCAATTAATCTCCCGAGATTCCTCCGATCCCAACGACGACGACGACTCACCCGGCGGCGACCGAGTCTTCATCCAAGTCTCCGGCAACCCAATGACGATCCCTATTCGATCTTGGCCGACGCGCCTGAGGACGAAGAAGGTGACAACTATTACGACCACGCTTTCGAAAACTCTGTGGCGGTGGCTCAGCCCCTGCTGGAGAAACAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

189

Amino Acids

20.98

Weight (kDa)

9.2

Isoelectric Point (pI)

96.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024936)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0405461
rosa_laevigata RLG00000032546
rosa_samantha Rh4DG126100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 110
AccBSI CCGCTC 1 cut(s) 212
AccI GTMKAC 1 cut(s) 101
AccII CGCG 2 cut(s) 140, 479
AciI CCGC 5 cut(s) 89, 190, 210, 412, 536
AclWI GGATC 2 cut(s) 378, 449
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 69
AcyI GRCGYC 2 cut(s) 98, 107
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 1 cut(s) 222
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 440
AlwI GGATC 2 cut(s) 378, 449
AlwNI CAGNNNCTG 1 cut(s) 550
Ama87I CYCGRG 1 cut(s) 370
AoxI GGCC 3 cut(s) 75, 158, 471
ApoI RAATTY 1 cut(s) 285
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
AseI ATTAAT 1 cut(s) 363
Asp700I GAANNNNTTC 1 cut(s) 330
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 2 cut(s) 76, 116
AsuC2I CCSGG 1 cut(s) 409
AsuHPI GGTGA 4 cut(s) 102, 144, 397, 509
AsuII TTCGAA 1 cut(s) 522
AvaI CYCGRG 1 cut(s) 370
AvaII GGWCC 1 cut(s) 116
AxyI CCTNAGG 1 cut(s) 483
BauI CACGAG 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 416
BccI CCATC 2 cut(s) 13, 157
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 114
BcnI CCSGG 1 cut(s) 409
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 1 cut(s) 291
BisI GCNGC 1 cut(s) 413
BlpI GCTNAGC 1 cut(s) 543
BlsI GCNGC 1 cut(s) 414
Bme1390I CCNGG 2 cut(s) 114, 409
Bme18I GGWCC 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 76, 116
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 2 cut(s) 114, 409
BpiI GAAGAC 1 cut(s) 416
Bpu1102I GCTNAGC 1 cut(s) 543
Bpu14I TTCGAA 1 cut(s) 522
BpuMI CCSGG 1 cut(s) 409
BsaHI GRCGYC 2 cut(s) 98, 107
BsaJI CCNNGG 2 cut(s) 72, 155
Bse21I CCTNAGG 1 cut(s) 483
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 72, 155
BseGI GGATG 2 cut(s) 5, 427
BseMII CTCAG 2 cut(s) 474, 557
BseRI GAGGAG 1 cut(s) 196
Bsh1236I CGCG 2 cut(s) 140, 479
Bsh1285I CGRYCG 1 cut(s) 419
BshFI GGCC 3 cut(s) 77, 160, 473
BsiEI CGRYCG 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 2 cut(s) 409, 439
BsmAI GTCTC 1 cut(s) 440
BsnI GGCC 3 cut(s) 77, 160, 473
BsoBI CYCGRG 1 cut(s) 370
Bsp119I TTCGAA 1 cut(s) 522
Bsp143I GATC 4 cut(s) 32, 383, 454, 465
Bsp1720I GCTNAGC 1 cut(s) 543
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 5 cut(s) 89, 190, 210, 412, 536
BspANI GGCC 3 cut(s) 77, 160, 473
BspCNI CTCAG 2 cut(s) 475, 556
BspFNI CGCG 2 cut(s) 140, 479
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 2 cut(s) 378, 449
BspT104I TTCGAA 1 cut(s) 522
BsrBI CCGCTC 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 72, 155
BssMI GATC 4 cut(s) 32, 383, 454, 465
BssNI GRCGYC 2 cut(s) 98, 107
BssSI CACGAG 1 cut(s) 230
BssT1I CCWWGG 2 cut(s) 72, 155
Bst2BI CACGAG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 114
Bst6I CTCTTC 2 cut(s) 30, 223
BstACI GRCGYC 2 cut(s) 98, 107
BstBI TTCGAA 1 cut(s) 522
BstDEI CTNAG 2 cut(s) 483, 543
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 5, 427
BstFNI CGCG 2 cut(s) 140, 479
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 4 cut(s) 35, 386, 457, 468
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 4 cut(s) 32, 383, 454, 465
BstMCI CGRYCG 1 cut(s) 419
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 2 cut(s) 112, 407
BstUI CGCG 2 cut(s) 140, 479
BstV2I GAAGAC 1 cut(s) 416
Bsu36I CCTNAGG 1 cut(s) 483
BsuRI GGCC 3 cut(s) 77, 160, 473
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 2 cut(s) 5, 427
CaiI CAGNNNCTG 1 cut(s) 550
CfoI GCGC 1 cut(s) 481
Cfr13I GGNCC 2 cut(s) 76, 116
CseI GACGC 3 cut(s) 87, 129, 485
CsiI ACCWGGT 1 cut(s) 112
CviAII CATG 2 cut(s) 73, 239
CviJI RGCY 7 cut(s) 77, 160, 171, 351, 473, 542, 547
CviKI_1 RGCY 7 cut(s) 77, 160, 171, 351, 473, 542, 547
DdeI CTNAG 2 cut(s) 483, 543
DpnI GATC 4 cut(s) 34, 385, 456, 467
DpnII GATC 4 cut(s) 32, 383, 454, 465
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 2 cut(s) 30, 223
EarI CTCTTC 2 cut(s) 30, 223
Eco130I CCWWGG 2 cut(s) 72, 155
Eco147I AGGCCT 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 69
Eco81I CCTNAGG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 72, 155
ErhI CCWWGG 2 cut(s) 72, 155
FaeI CATG 2 cut(s) 76, 242
FaiI YATR 4 cut(s) 74, 240, 244, 315
FatI CATG 2 cut(s) 72, 238
FauI CCCGC 1 cut(s) 197
FblI GTMKAC 1 cut(s) 101
Fnu4HI GCNGC 1 cut(s) 413
FokI GGATG 1 cut(s) 414
Fsp4HI GCNGC 1 cut(s) 413
FspBI CTAG 1 cut(s) 291
GlaI GCGC 1 cut(s) 480
GluI GCNGC 1 cut(s) 413
HaeIII GGCC 3 cut(s) 77, 160, 473
HapII CCGG 2 cut(s) 409, 439
HgaI GACGC 3 cut(s) 87, 129, 485
HhaI GCGC 1 cut(s) 481
Hin1I GRCGYC 2 cut(s) 98, 107
Hin1II CATG 2 cut(s) 76, 242
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HinfI GANTC 6 cut(s) 121, 130, 307, 375, 402, 421
HpaII CCGG 2 cut(s) 409, 439
HphI GGTGA 4 cut(s) 102, 144, 397, 509
Hpy166II GTNNAC 2 cut(s) 102, 281
Hpy188I TCNGA 4 cut(s) 49, 120, 306, 383
Hpy188III TCNNGA 2 cut(s) 127, 370
Hpy8I GTNNAC 2 cut(s) 102, 281
Hpy99I CGWCG 7 cut(s) 97, 109, 145, 396, 399, 402, 479
HpyAV CCTTC 3 cut(s) 90, 195, 488
HpyCH4IV ACGT 1 cut(s) 107
HpyF3I CTNAG 2 cut(s) 483, 543
HpySE526I ACGT 1 cut(s) 107
Hsp92I GRCGYC 2 cut(s) 98, 107
Hsp92II CATG 2 cut(s) 76, 242
HspAI GCGC 1 cut(s) 479
Kzo9I GATC 4 cut(s) 32, 383, 454, 465
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 8 cut(s) 99, 126, 289, 422, 452, 495, 539, 563
MabI ACCWGGT 1 cut(s) 112
MaeI CTAG 1 cut(s) 291
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 2 cut(s) 108, 497
MalI GATC 4 cut(s) 34, 385, 456, 467
MbiI CCGCTC 1 cut(s) 212
MboI GATC 4 cut(s) 32, 383, 454, 465
MboII GAAGA 5 cut(s) 17, 210, 338, 416, 503
MluCI AATT 3 cut(s) 222, 285, 360
MluI ACGCGT 1 cut(s) 138
MlyI GAGTC 3 cut(s) 124, 396, 430
MmeI TCCRAC 1 cut(s) 224
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 2 cut(s) 56, 363
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 2 cut(s) 409, 439
MspR9I CCNGG 2 cut(s) 114, 409
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 2 cut(s) 140, 479
NciI CCSGG 1 cut(s) 409
NcoI CCATGG 1 cut(s) 72
NdeII GATC 4 cut(s) 32, 383, 454, 465
NlaIII CATG 2 cut(s) 76, 242
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 108, 497
NspV TTCGAA 1 cut(s) 522
PceI AGGCCT 1 cut(s) 160
PcsI WCGNNNNNNNCGW 3 cut(s) 89, 101, 397
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 3 cut(s) 121, 307, 375
PflFI GACNNNGTC 2 cut(s) 97, 420
PkrI GCNGC 1 cut(s) 414
PleI GAGTC 3 cut(s) 124, 396, 429
PpsI GAGTC 3 cut(s) 124, 396, 429
PshBI ATTAAT 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 2 cut(s) 76, 116
PstNI CAGNNNCTG 1 cut(s) 550
PsyI GACNNNGTC 2 cut(s) 97, 420
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 2 cut(s) 56, 363
SatI GCNGC 1 cut(s) 413
Sau3AI GATC 4 cut(s) 32, 383, 454, 465
Sau96I GGNCC 2 cut(s) 76, 116
SchI GAGTC 3 cut(s) 124, 396, 430
ScrFI CCNGG 2 cut(s) 114, 409
SetI ASST 8 cut(s) 110, 115, 173, 182, 199, 206, 278, 499
SexAI ACCWGGT 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 522
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 71
Sse9I AATT 3 cut(s) 222, 285, 360
SseBI AGGCCT 1 cut(s) 160
SsiI CCGC 5 cut(s) 89, 190, 210, 412, 536
SspMI CTAG 1 cut(s) 291
StuI AGGCCT 1 cut(s) 160
StyD4I CCNGG 2 cut(s) 112, 407
StyI CCWWGG 2 cut(s) 72, 155
TaiI ACGT 1 cut(s) 110
TaqI TCGA 4 cut(s) 83, 337, 464, 522
TaqII GACCGA 1 cut(s) 433
TasI AATT 3 cut(s) 222, 285, 360
TauI GCSGC 1 cut(s) 415
TfiI GAWTC 3 cut(s) 121, 307, 375
Tru1I TTAA 2 cut(s) 56, 363
Tru9I TTAA 2 cut(s) 56, 363
TseFI GTSAC 2 cut(s) 108, 497
Tsp45I GTSAC 2 cut(s) 108, 497
TspDTI ATGAA 4 cut(s) 227, 299, 323, 416
TspGWI ACGGA 1 cut(s) 153
Tth111I GACNNNGTC 2 cut(s) 97, 420
VpaK11BI GGWCC 1 cut(s) 116
VspI ATTAAT 1 cut(s) 363
XapI RAATTY 1 cut(s) 285
XmiI GTMKAC 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 1 cut(s) 291
ZraI GACGTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.