Rh4DG126100

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0024936
Physical Location & Seq
Forward (+)
20522643 .. 20523125
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG126100.1

Sequence Viewer

Length: 483 bp
ATGGCCCCTTCGACACCGCCGACGGCGTCTACGACGTCACCTGGTCCGAATCTCACGACTCCCTACTCGTCGCCTCCATCACCAAGGCCTCCGTCAAGCTCTACGACCTCGCCTTCCCGCCGACCTCCAACCTCCTCCGCTCCCTCTTCAATTCTACTCCTGCTTCATGTATGGTTCTCTCCACCCTCAATATCTATTAGCACCTGTTCACAAATTCCTAGCAAACCTTCTTTGATTCATTATGGGGAGAAAGAAGAAGTTAATCGACAAGAAAAAGGCTACTTTCCAATTAATCTCCTGAGATTCCTCCAATCCCAACGACGACGACGACTTAGTCTTCATCCAAGTCTCCGGCAACCCAATGACGATCCAGATTTGATCTTGGCTGACGCGCCTGAGGACGAAGAAGGTGACAACTATTACGACCACGCTTTCGAAAACTCTGTGGCGGTGGCTCAGCCCCTGCTGGAGAAACAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

160

Amino Acids

17.63

Weight (kDa)

6.06

Isoelectric Point (pI)

97.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024936)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0405461
rosa_laevigata RLG00000032546
rosa_samantha Rh4DG126100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 333
AatII GACGTC 1 cut(s) 38
AccBSI CCGCTC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 29
AccII CGCG 1 cut(s) 392
AciI CCGC 4 cut(s) 17, 118, 138, 449
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 1 cut(s) 213
AcyI GRCGYC 2 cut(s) 26, 35
AgsI TTSAA 1 cut(s) 150
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 1 cut(s) 362
AlwNI CAGNNNCTG 1 cut(s) 463
AoxI GGCC 2 cut(s) 3, 86
ApoI RAATTY 1 cut(s) 213
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
AseI ATTAAT 1 cut(s) 291
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 2 cut(s) 4, 44
AsuHPI GGTGA 3 cut(s) 30, 72, 422
AsuII TTCGAA 1 cut(s) 435
AvaII GGWCC 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 329
BccI CCATC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 1 cut(s) 219
BlpI GCTNAGC 1 cut(s) 456
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 4, 44
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 329
Bpu1102I GCTNAGC 1 cut(s) 456
Bpu14I TTCGAA 1 cut(s) 435
BsaHI GRCGYC 2 cut(s) 26, 35
BsaJI CCNNGG 1 cut(s) 83
Bse21I CCTNAGG 1 cut(s) 396
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 340
BseMII CTCAG 3 cut(s) 290, 387, 470
BseRI GAGGAG 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 392
BshFI GGCC 2 cut(s) 5, 88
BsiSI CCGG 1 cut(s) 352
BsmAI GTCTC 1 cut(s) 353
BsnI GGCC 2 cut(s) 5, 88
Bsp119I TTCGAA 1 cut(s) 435
Bsp143I GATC 2 cut(s) 367, 378
Bsp1720I GCTNAGC 1 cut(s) 456
BspACI CCGC 4 cut(s) 17, 118, 138, 449
BspANI GGCC 2 cut(s) 5, 88
BspCNI CTCAG 3 cut(s) 291, 388, 469
BspFNI CGCG 1 cut(s) 392
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 362
BspT104I TTCGAA 1 cut(s) 435
BsrBI CCGCTC 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 2 cut(s) 367, 378
BssNI GRCGYC 2 cut(s) 26, 35
BssT1I CCWWGG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 2 cut(s) 26, 35
BstBI TTCGAA 1 cut(s) 435
BstDEI CTNAG 4 cut(s) 299, 332, 396, 456
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 1 cut(s) 392
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 2 cut(s) 370, 381
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 2 cut(s) 367, 378
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstUI CGCG 1 cut(s) 392
BstV2I GAAGAC 1 cut(s) 329
Bsu36I CCTNAGG 1 cut(s) 396
BsuRI GGCC 2 cut(s) 5, 88
BtsCI GGATG 1 cut(s) 340
CaiI CAGNNNCTG 1 cut(s) 463
CfoI GCGC 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 4, 44
CseI GACGC 2 cut(s) 15, 398
CsiI ACCWGGT 1 cut(s) 40
CviAII CATG 1 cut(s) 167
CviJI RGCY 7 cut(s) 5, 88, 99, 279, 386, 455, 460
CviKI_1 RGCY 7 cut(s) 5, 88, 99, 279, 386, 455, 460
DdeI CTNAG 4 cut(s) 299, 332, 396, 456
DpnI GATC 2 cut(s) 369, 380
DpnII GATC 2 cut(s) 367, 378
DrdI GACNNNNNNGTC 1 cut(s) 333
DseDI GACNNNNNNGTC 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 83
Eco147I AGGCCT 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 44
Eco81I CCTNAGG 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 1 cut(s) 170
FaiI YATR 3 cut(s) 168, 172, 243
FatI CATG 1 cut(s) 166
FauI CCCGC 1 cut(s) 125
FblI GTMKAC 1 cut(s) 29
FokI GGATG 1 cut(s) 327
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 393
HaeIII GGCC 2 cut(s) 5, 88
HapII CCGG 1 cut(s) 352
HgaI GACGC 2 cut(s) 15, 398
HhaI GCGC 1 cut(s) 394
Hin1I GRCGYC 2 cut(s) 26, 35
Hin1II CATG 1 cut(s) 170
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HinfI GANTC 4 cut(s) 49, 58, 235, 303
HpaII CCGG 1 cut(s) 352
HphI GGTGA 3 cut(s) 30, 72, 422
Hpy166II GTNNAC 2 cut(s) 30, 209
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 3 cut(s) 55, 298, 371
Hpy8I GTNNAC 2 cut(s) 30, 209
Hpy99I CGWCG 6 cut(s) 25, 37, 73, 324, 327, 330
HpyAV CCTTC 4 cut(s) 18, 123, 237, 401
HpyCH4IV ACGT 1 cut(s) 35
HpyF3I CTNAG 4 cut(s) 299, 332, 396, 456
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 2 cut(s) 26, 35
Hsp92II CATG 1 cut(s) 170
HspAI GCGC 1 cut(s) 392
Kzo9I GATC 2 cut(s) 367, 378
LmnI GCTCC 1 cut(s) 145
MabI ACCWGGT 1 cut(s) 40
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 36, 410
MalI GATC 2 cut(s) 369, 380
MbiI CCGCTC 1 cut(s) 140
MboI GATC 2 cut(s) 367, 378
MboII GAAGA 4 cut(s) 138, 266, 329, 416
MluCI AATT 3 cut(s) 150, 213, 288
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 152
MseI TTAA 2 cut(s) 261, 291
MspI CCGG 1 cut(s) 352
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
MvnI CGCG 1 cut(s) 392
NdeII GATC 2 cut(s) 367, 378
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 36, 410
NspV TTCGAA 1 cut(s) 435
PceI AGGCCT 1 cut(s) 88
PcsI WCGNNNNNNNCGW 3 cut(s) 17, 29, 325
PfeI GAWTC 3 cut(s) 49, 235, 303
PflFI GACNNNGTC 2 cut(s) 25, 333
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PshBI ATTAAT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 4, 44
PstNI CAGNNNCTG 1 cut(s) 463
PsyI GACNNNGTC 2 cut(s) 25, 333
SaqAI TTAA 2 cut(s) 261, 291
Sau3AI GATC 2 cut(s) 367, 378
Sau96I GGNCC 2 cut(s) 4, 44
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 42
SetI ASST 9 cut(s) 38, 43, 101, 110, 127, 134, 206, 229, 412
SexAI ACCWGGT 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 435
SinI GGWCC 1 cut(s) 44
Sse9I AATT 3 cut(s) 150, 213, 288
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 4 cut(s) 17, 118, 138, 449
SspMI CTAG 1 cut(s) 219
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 1 cut(s) 83
TaiI ACGT 1 cut(s) 38
TaqI TCGA 3 cut(s) 11, 265, 435
TasI AATT 3 cut(s) 150, 213, 288
TfiI GAWTC 3 cut(s) 49, 235, 303
Tru1I TTAA 2 cut(s) 261, 291
Tru9I TTAA 2 cut(s) 261, 291
TseFI GTSAC 2 cut(s) 36, 410
Tsp45I GTSAC 2 cut(s) 36, 410
TspDTI ATGAA 3 cut(s) 155, 227, 329
TspGWI ACGGA 1 cut(s) 81
Tth111I GACNNNGTC 2 cut(s) 25, 333
VpaK11BI GGWCC 1 cut(s) 44
VspI ATTAAT 1 cut(s) 291
XapI RAATTY 1 cut(s) 213
XmiI GTMKAC 1 cut(s) 29
XspI CTAG 1 cut(s) 219
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.