RLG00000032546

Protein SDA1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0024936
Physical Location & Seq
Forward (+)
16310413 .. 16311675
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032546

Sequence Viewer

Length: 621 bp
ATGGCCCCTTCGACACCACCAACGGCGTCTATGACGTCACCTGGTCCAAATCTCATGACTCCCTACTCGTCGCCTCCATCACTAAGGCCTCCGTCAAGCTCTACGACCTCGCCTTCCCGCCGACCTCCAACCTCCTCCTCTTCCTCTTCAGTTCTACTCCTGCTTCATGTATGGTTCTCTCCACCCTTAATATCTATTAGCACATGTTCACAAATTCCTAGCAAACCTTCTCTGATTCATTATGGGGAGAAAGAAGAAGTTCATCGACAAGAAAAAGGCTACTTTCCAATTAATCTCCCGAGATTCCTCCGATCCCAACGACGACGACTCACCCGGTGGCGACCGAGTCTTCATCCAAGTCTCCAGCAACCCAACAACGATCCCGATTCGATCATGGCCGACGCGCCTGAGGATGAAGAATGTGACAACTATTACGACCCCGCTTTTGAAAACTCTGTGGCGGTGGCTCAGCCCCTGAGGGAGGCTCGAGCAATAAGCAGAAGGAACACAAGTATGCCACTTGCTGCAAAGAGAGCAAAGGTAGCTAAATCTCAAGTGGAAAAATGTAAAAAGCAACAGCTTTCTGCCAAAAATTTCCAAGGGAAGAAAGCATGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC130_3NT SDA1

Protein Analysis

207

Amino Acids

22.99

Weight (kDa)

10.01

Isoelectric Point (pI)

90.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024936)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0405461
rosa_laevigata RLG00000032546
rosa_samantha Rh4DG126100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
AccII CGCG 1 cut(s) 404
AciI CCGC 3 cut(s) 118, 441, 461
AclWI GGATC 2 cut(s) 306, 374
AcoI YGGCCR 1 cut(s) 396
AcsI RAATTY 2 cut(s) 213, 592
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 2 cut(s) 26, 35
AdeI CACNNNGTG 1 cut(s) 336
AfiI CCNNNNNNNGG 1 cut(s) 481
AflIII ACRYGT 1 cut(s) 203
AgsI TTSAA 1 cut(s) 449
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 3 cut(s) 99, 545, 580
AluI AGCT 3 cut(s) 99, 545, 580
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 2 cut(s) 306, 374
AlwNI CAGNNNCTG 1 cut(s) 475
Ama87I CYCGRG 2 cut(s) 298, 486
AoxI GGCC 3 cut(s) 3, 86, 396
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 2 cut(s) 213, 592
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
AseI ATTAAT 1 cut(s) 291
Asp700I GAANNNNTTC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 2 cut(s) 4, 44
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 2 cut(s) 30, 322
AvaI CYCGRG 2 cut(s) 298, 486
AvaII GGWCC 1 cut(s) 44
AxyI CCTNAGG 2 cut(s) 408, 476
BbsI GAAGAC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 511
BccI CCATC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 42
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 1 cut(s) 219
BisI GCNGC 1 cut(s) 525
BlpI GCTNAGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 526
Bme1390I CCNGG 2 cut(s) 42, 334
Bme18I GGWCC 1 cut(s) 44
BmeT110I CYCGRG 2 cut(s) 298, 486
BmgT120I GGNCC 2 cut(s) 4, 44
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 42, 334
BpiI GAAGAC 1 cut(s) 341
BplI GAGNNNNNCTC 2 cut(s) 469, 501
BpmI CTGGAG 1 cut(s) 347
Bpu1102I GCTNAGC 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 537
BpuMI CCSGG 1 cut(s) 334
BsaHI GRCGYC 2 cut(s) 26, 35
BsaJI CCNNGG 1 cut(s) 598
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse21I CCTNAGG 2 cut(s) 408, 476
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 598
BseGI GGATG 2 cut(s) 352, 418
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMII CTCAG 3 cut(s) 399, 467, 482
BseRI GAGGAG 2 cut(s) 124, 127
BseXI GCAGC 1 cut(s) 511
Bsh1236I CGCG 1 cut(s) 404
Bsh1285I CGRYCG 1 cut(s) 344
BshFI GGCC 3 cut(s) 5, 88, 398
BsiEI CGRYCG 1 cut(s) 344
BsiHKCI CYCGRG 2 cut(s) 298, 486
BsiSI CCGG 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 1 cut(s) 365
BsnI GGCC 3 cut(s) 5, 88, 398
BsoBI CYCGRG 2 cut(s) 298, 486
Bsp143I GATC 3 cut(s) 311, 379, 390
Bsp1720I GCTNAGC 1 cut(s) 468
BspACI CCGC 3 cut(s) 118, 441, 461
BspANI GGCC 3 cut(s) 5, 88, 398
BspCNI CTCAG 3 cut(s) 400, 468, 481
BspFNI CGCG 1 cut(s) 404
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 306, 374
BssECI CCNNGG 1 cut(s) 598
BssMI GATC 3 cut(s) 311, 379, 390
BssNI GRCGYC 2 cut(s) 26, 35
BssT1I CCWWGG 1 cut(s) 598
Bst2UI CCWGG 1 cut(s) 42
Bst6I CTCTTC 2 cut(s) 145, 151
BstACI GRCGYC 2 cut(s) 26, 35
BstDEI CTNAG 4 cut(s) 83, 408, 468, 476
BstENI CCTNNNNNAGG 1 cut(s) 479
BstF5I GGATG 2 cut(s) 352, 418
BstFNI CGCG 1 cut(s) 404
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 3 cut(s) 314, 382, 393
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 3 cut(s) 311, 379, 390
BstMCI CGRYCG 1 cut(s) 344
BstMWI GCNNNNNNNGC 2 cut(s) 533, 542
BstNI CCWGG 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 207
BstSCI CCNGG 2 cut(s) 40, 332
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 511
BstV2I GAAGAC 1 cut(s) 341
Bsu36I CCTNAGG 2 cut(s) 408, 476
BsuRI GGCC 3 cut(s) 5, 88, 398
BtsCI GGATG 2 cut(s) 352, 418
CaiI CAGNNNCTG 1 cut(s) 475
CciI TCATGA 1 cut(s) 54
CfoI GCGC 1 cut(s) 406
Cfr13I GGNCC 2 cut(s) 4, 44
CseI GACGC 2 cut(s) 15, 410
CsiI ACCWGGT 1 cut(s) 40
CviAII CATG 5 cut(s) 55, 167, 204, 394, 612
DdeI CTNAG 4 cut(s) 83, 408, 468, 476
DpnI GATC 3 cut(s) 313, 381, 392
DpnII GATC 3 cut(s) 311, 379, 390
DraIII CACNNNGTG 1 cut(s) 336
EaeI YGGCCR 1 cut(s) 396
Eam1104I CTCTTC 2 cut(s) 145, 151
EarI CTCTTC 2 cut(s) 145, 151
Eco130I CCWWGG 1 cut(s) 598
Eco147I AGGCCT 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 132
Eco81I CCTNAGG 2 cut(s) 408, 476
Eco88I CYCGRG 2 cut(s) 298, 486
EcoNI CCTNNNNNAGG 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 598
FaeI CATG 5 cut(s) 58, 170, 207, 397, 615
FaiI YATR 9 cut(s) 32, 56, 168, 172, 205, 243, 395, 515, 613
FatI CATG 5 cut(s) 54, 166, 203, 393, 611
FauI CCCGC 2 cut(s) 125, 448
Fnu4HI GCNGC 1 cut(s) 525
FokI GGATG 2 cut(s) 339, 425
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 405
GluI GCNGC 1 cut(s) 525
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 3 cut(s) 5, 88, 398
HapII CCGG 1 cut(s) 334
HgaI GACGC 2 cut(s) 15, 410
HhaI GCGC 1 cut(s) 406
Hin1I GRCGYC 2 cut(s) 26, 35
Hin1II CATG 5 cut(s) 58, 170, 207, 397, 615
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HinfI GANTC 6 cut(s) 58, 235, 303, 327, 346, 386
HpaII CCGG 1 cut(s) 334
HphI GGTGA 2 cut(s) 30, 322
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 2 cut(s) 234, 311
Hpy188III TCNNGA 3 cut(s) 55, 298, 383
Hpy8I GTNNAC 1 cut(s) 209
Hpy99I CGWCG 4 cut(s) 73, 324, 327, 404
HpyAV CCTTC 4 cut(s) 18, 123, 237, 495
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 533, 542
HpyF3I CTNAG 4 cut(s) 83, 408, 468, 476
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 2 cut(s) 26, 35
Hsp92II CATG 5 cut(s) 58, 170, 207, 397, 615
HspAI GCGC 1 cut(s) 404
Kzo9I GATC 3 cut(s) 311, 379, 390
LpnPI CCDG 7 cut(s) 27, 54, 173, 347, 377, 420, 488
Lsp1109I GCAGC 1 cut(s) 511
MabI ACCWGGT 1 cut(s) 40
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 36, 422
MalI GATC 3 cut(s) 313, 381, 392
MboI GATC 3 cut(s) 311, 379, 390
MboII GAAGA 6 cut(s) 132, 138, 266, 341, 428, 616
MluCI AATT 3 cut(s) 213, 288, 592
MlyI GAGTC 3 cut(s) 52, 321, 355
MmeI TCCRAC 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 2 cut(s) 188, 291
MslI CAYNNNNRTG 2 cut(s) 512, 616
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 2 cut(s) 42, 334
MvaI CCWGG 1 cut(s) 42
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 2 cut(s) 533, 542
NciI CCSGG 1 cut(s) 334
NdeII GATC 3 cut(s) 311, 379, 390
NlaIII CATG 5 cut(s) 58, 170, 207, 397, 615
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 36, 422
NspI RCATGY 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 486
PagI TCATGA 1 cut(s) 54
PceI AGGCCT 1 cut(s) 88
PciI ACATGT 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 3 cut(s) 235, 303, 386
PflFI GACNNNGTC 1 cut(s) 345
PkrI GCNGC 1 cut(s) 526
PleI GAGTC 3 cut(s) 52, 321, 354
PpsI GAGTC 3 cut(s) 52, 321, 354
PscI ACATGT 1 cut(s) 203
PshBI ATTAAT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 4, 44
PspXI VCTCGAGB 1 cut(s) 486
PstNI CAGNNNCTG 1 cut(s) 475
PsyI GACNNNGTC 1 cut(s) 345
RseI CAYNNNNRTG 2 cut(s) 512, 616
SaqAI TTAA 2 cut(s) 188, 291
SatI GCNGC 1 cut(s) 525
Sau3AI GATC 3 cut(s) 311, 379, 390
Sau96I GGNCC 2 cut(s) 4, 44
SchI GAGTC 3 cut(s) 52, 321, 355
ScrFI CCNGG 2 cut(s) 42, 334
SexAI ACCWGGT 1 cut(s) 40
Sfr274I CTCGAG 1 cut(s) 486
SinI GGWCC 1 cut(s) 44
SlaI CTCGAG 1 cut(s) 486
SmiMI CAYNNNNRTG 2 cut(s) 512, 616
SmlI CTYRAG 2 cut(s) 486, 552
SmoI CTYRAG 2 cut(s) 486, 552
Sse9I AATT 3 cut(s) 213, 288, 592
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 3 cut(s) 118, 441, 461
SspMI CTAG 1 cut(s) 219
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 2 cut(s) 40, 332
StyI CCWWGG 1 cut(s) 598
TaiI ACGT 1 cut(s) 38
TaqI TCGA 4 cut(s) 11, 265, 389, 487
TaqII GACCGA 1 cut(s) 358
TasI AATT 3 cut(s) 213, 288, 592
TfiI GAWTC 3 cut(s) 235, 303, 386
Tru1I TTAA 2 cut(s) 188, 291
Tru9I TTAA 2 cut(s) 188, 291
TseFI GTSAC 2 cut(s) 36, 422
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 2 cut(s) 36, 422
TspDTI ATGAA 5 cut(s) 155, 227, 251, 341, 429
TspGWI ACGGA 1 cut(s) 81
Tth111I GACNNNGTC 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 44
VspI ATTAAT 1 cut(s) 291
XagI CCTNNNNNAGG 1 cut(s) 479
XapI RAATTY 2 cut(s) 213, 592
XceI RCATGY 1 cut(s) 207
XhoI CTCGAG 1 cut(s) 486
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 1 cut(s) 219
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.