RchiOBHm_Chr4g0412771

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0024978
Physical Location & Seq
Reverse (-)
36750794 .. 36752855
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 753 bp
ATGAAGGATCATGGTGTTAAGAAGCCTTGGACTAAAGAGCTTGATATTAAAGTGGATTTGCATTTAGGGTGTGGTTCTTCAACTCAAGTTCTGAAATCTTCAAAGGAACGGAAAGCCTTGTTGTTACAGAATAGGTTGCAGGCTCATATTCCTGGAAGAGGGGGCTTTATGGGGGTTGGGGTTGATGGGATACCATCTTTGATTGACGCATCATATCTCTATGTTCCAAGCTTTGTTTCACTTAAAGATGTCTTTGGGGGTCAAAACTTGAAGTCTGGTAGATCTGAAGAATCGAGTGTTAGAGAAGCTGGTGAGTTGCAACAACCTGCACCGAATGAGACAAAGCCCAGAAGGACATGCAATTTAAAAGACCAATCTGTCATAAGTCAAAGAGGGCCAGGTAATGTGAAAGCTAATGCAGCGGATTATGGGAATGCTGAAGCAGCCCAGCGGAATCTTCTATATAAAGCTAATGGATTAGATCAAGGGAATGTGCAATCTAAAGCTGCAGTAGTTGAACACAAACAACAGGGTGACATGAAACCACCGAAGAAGGCAAAAACCACAGATAGGGTTCAACCAATAGAAGCCTCTGCCTCCCAAATGGTGCCGATATCACCATCATTATCCCAGTCAACACAGCCATCTGTTTCGCTGCCATTAACTGGAAATCAGTTCATTCATCCCACAACTGTTCTAAAGATGAAGACCAAGCCCCCTTCAAAGAGCAAGAGAGCTCCAGAAAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

250

Amino Acids

27.04

Weight (kDa)

9.87

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024978)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0412771
rosa_samantha Rh4BG175200 Rh4DG172600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
Acc36I ACCTGC 1 cut(s) 334
AccB1I GGYRCC 1 cut(s) 607
AccB7I CCANNNNNTGG 1 cut(s) 665
AciI CCGC 2 cut(s) 422, 451
AclWI GGATC 1 cut(s) 15
AcuI CTGAAG 2 cut(s) 306, 459
AfiI CCNNNNNNNGG 3 cut(s) 158, 570, 665
AgsI TTSAA 6 cut(s) 81, 102, 271, 518, 578, 723
AjnI CCWGG 2 cut(s) 151, 397
AjuI GAANNNNNNNTTGG 2 cut(s) 220, 252
AluBI AGCT 7 cut(s) 40, 231, 308, 413, 470, 506, 737
AluI AGCT 7 cut(s) 40, 231, 308, 413, 470, 506, 737
Alw21I GWGCWC 1 cut(s) 739
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 1 cut(s) 15
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 4 cut(s) 419, 443, 506, 655
AspS9I GGNCC 1 cut(s) 395
AsuHPI GGTGA 3 cut(s) 323, 545, 609
BanI GGYRCC 1 cut(s) 607
BanII GRGCYC 1 cut(s) 739
BbsI GAAGAC 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 739
BbvI GCAGC 4 cut(s) 431, 455, 493, 642
BccI CCATC 4 cut(s) 179, 202, 628, 652
BciT130I CCWGG 2 cut(s) 153, 399
BciVI GTATCC 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 507
BfuAI ACCTGC 1 cut(s) 334
BfuI GTATCC 1 cut(s) 183
BglII AGATCT 1 cut(s) 281
BisI GCNGC 4 cut(s) 420, 444, 507, 656
BlsI GCNGC 4 cut(s) 421, 445, 508, 657
Bme1390I CCNGG 2 cut(s) 153, 399
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 609
BmrFI CCNGG 2 cut(s) 153, 399
BmrI ACTGGG 1 cut(s) 625
BmsI GCATC 1 cut(s) 218
BmuI ACTGGG 1 cut(s) 625
BpiI GAAGAC 1 cut(s) 713
BpmI CTGGAG 1 cut(s) 723
BpuEI CTTGAG 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 570, 665
Bse1I ACTGG 2 cut(s) 631, 670
BseBI CCWGG 2 cut(s) 153, 399
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 682
BseLI CCNNNNNNNGG 3 cut(s) 158, 570, 665
BseNI ACTGG 2 cut(s) 631, 670
BseXI GCAGC 4 cut(s) 431, 455, 493, 642
BseYI CCCAGC 1 cut(s) 447
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 1 cut(s) 397
BshNI GGYRCC 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 739
BslI CCNNNNNNNGG 3 cut(s) 158, 570, 665
BsmAI GTCTC 1 cut(s) 332
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 739
Bsp143I GATC 3 cut(s) 7, 281, 481
BspACI CCGC 2 cut(s) 422, 451
BspANI GGCC 1 cut(s) 397
BspLI GGNNCC 1 cut(s) 609
BspMAI CTGCAG 1 cut(s) 511
BspMI ACCTGC 1 cut(s) 334
BspPI GGATC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 607
BsrI ACTGG 2 cut(s) 631, 670
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 3 cut(s) 7, 281, 481
BssT1I CCWWGG 1 cut(s) 26
Bst2UI CCWGG 2 cut(s) 153, 399
Bst4CI ACNGT 1 cut(s) 694
Bst6I CTCTTC 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 141
BstENI CCTNNNNNAGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 682
BstKTI GATC 3 cut(s) 10, 284, 484
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 3 cut(s) 7, 281, 481
BstMWI GCNNNNNNNGC 2 cut(s) 419, 443
BstNI CCWGG 2 cut(s) 153, 399
BstNSI RCATGY 1 cut(s) 360
BstSCI CCNGG 2 cut(s) 151, 397
BstSFI CTRYAG 1 cut(s) 507
BstV1I GCAGC 4 cut(s) 431, 455, 493, 642
BstV2I GAAGAC 1 cut(s) 713
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 397
BtsCI GGATG 1 cut(s) 682
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 395
CseI GACGC 1 cut(s) 215
CviAII CATG 3 cut(s) 11, 357, 538
DpnI GATC 3 cut(s) 9, 283, 483
DpnII GATC 3 cut(s) 7, 281, 481
DraI TTTAAA 1 cut(s) 366
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 737
Eco130I CCWWGG 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 739
Eco32I GATATC 1 cut(s) 615
Eco53kI GAGCTC 1 cut(s) 737
Eco57I CTGAAG 2 cut(s) 306, 459
EcoICRI GAGCTC 1 cut(s) 737
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoRII CCWGG 2 cut(s) 151, 397
EcoRV GATATC 1 cut(s) 615
EcoT14I CCWWGG 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 739
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 3 cut(s) 14, 360, 541
FatI CATG 3 cut(s) 10, 356, 537
Fnu4HI GCNGC 4 cut(s) 420, 444, 507, 656
FokI GGATG 1 cut(s) 669
FriOI GRGCYC 1 cut(s) 739
Fsp4HI GCNGC 4 cut(s) 420, 444, 507, 656
GluI GCNGC 4 cut(s) 420, 444, 507, 656
GsaI CCCAGC 1 cut(s) 451
GsuI CTGGAG 1 cut(s) 723
HaeIII GGCC 1 cut(s) 397
HgaI GACGC 1 cut(s) 215
Hin1II CATG 3 cut(s) 14, 360, 541
HincII GTYRAC 1 cut(s) 636
HindII GTYRAC 1 cut(s) 636
HindIII AAGCTT 1 cut(s) 229
HinfI GANTC 2 cut(s) 290, 454
HphI GGTGA 3 cut(s) 323, 545, 609
Hpy166II GTNNAC 1 cut(s) 636
Hpy188I TCNGA 2 cut(s) 93, 286
Hpy188III TCNNGA 1 cut(s) 740
Hpy8I GTNNAC 1 cut(s) 636
HpyAV CCTTC 3 cut(s) 345, 547, 729
HpyCH4III ACNGT 1 cut(s) 694
HpyCH4V TGCA 8 cut(s) 61, 139, 319, 329, 360, 419, 496, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 443
Hsp92II CATG 3 cut(s) 14, 360, 541
Kzo9I GATC 3 cut(s) 7, 281, 481
LmnI GCTCC 1 cut(s) 742
Lsp1109I GCAGC 4 cut(s) 431, 455, 493, 642
LweI GCATC 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 123, 533
MalI GATC 3 cut(s) 9, 283, 483
MboI GATC 3 cut(s) 7, 281, 481
MboII GAAGA 7 cut(s) 69, 90, 168, 299, 449, 562, 718
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 1 cut(s) 739
MluCI AATT 1 cut(s) 361
MnlI CCTC 4 cut(s) 152, 386, 601, 607
MseI TTAA 5 cut(s) 18, 48, 243, 365, 662
MspA1I CMGCKG 2 cut(s) 422, 451
MspR9I CCNGG 2 cut(s) 153, 399
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 2 cut(s) 153, 399
MwoI GCNNNNNNNGC 2 cut(s) 419, 443
NdeII GATC 3 cut(s) 7, 281, 481
NlaIII CATG 3 cut(s) 14, 360, 541
NlaIV GGNNCC 1 cut(s) 609
NmuCI GTSAC 1 cut(s) 533
NspI RCATGY 1 cut(s) 360
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 2 cut(s) 290, 454
PflMI CCANNNNNTGG 1 cut(s) 665
PfoI TCCNGGA 1 cut(s) 151
PkrI GCNGC 4 cut(s) 421, 445, 508, 657
Psp124BI GAGCTC 1 cut(s) 739
Psp6I CCWGG 2 cut(s) 151, 397
PspFI CCCAGC 1 cut(s) 447
PspGI CCWGG 2 cut(s) 151, 397
PspN4I GGNNCC 1 cut(s) 609
PspPI GGNCC 1 cut(s) 395
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 281
SacI GAGCTC 1 cut(s) 739
SaqAI TTAA 5 cut(s) 18, 48, 243, 365, 662
SatI GCNGC 4 cut(s) 420, 444, 507, 656
Sau3AI GATC 3 cut(s) 7, 281, 481
Sau96I GGNCC 1 cut(s) 395
ScrFI CCNGG 2 cut(s) 153, 399
SduI GDGCHC 1 cut(s) 739
SfaNI GCATC 1 cut(s) 218
SfcI CTRYAG 1 cut(s) 507
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 1 cut(s) 361
SsiI CCGC 2 cut(s) 422, 451
SstI GAGCTC 1 cut(s) 739
StyD4I CCNGG 2 cut(s) 151, 397
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 694
TaqI TCGA 1 cut(s) 293
TasI AATT 1 cut(s) 361
TfiI GAWTC 2 cut(s) 290, 454
Tru1I TTAA 5 cut(s) 18, 48, 243, 365, 662
Tru9I TTAA 5 cut(s) 18, 48, 243, 365, 662
TseFI GTSAC 1 cut(s) 533
TseI GCWGC 4 cut(s) 419, 443, 506, 655
Tsp45I GTSAC 1 cut(s) 533
TspDTI ATGAA 5 cut(s) 17, 554, 667, 671, 719
TspGWI ACGGA 1 cut(s) 124
Van91I CCANNNNNTGG 1 cut(s) 665
XagI CCTNNNNNAGG 1 cut(s) 156
XceI RCATGY 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.