Rh4BG175200

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0024978
Physical Location & Seq
Reverse (-)
31213330 .. 31214866
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG175200.1

Sequence Viewer

Length: 609 bp
ATGGGGGTTGAGGTTGATGGGATACCATCTTTGATTGACGCATCATATCTCTATGTTCCAAGCTTTGTTTCACTTAAAGATGTCTTTGGGGGTCAAAACTTGAAGACTGATAATATCCAATTTCCCCTATGGTCTGGTAGATCTGAAGAATCGAGTGTTAGAGAAGCTGATGAGTTTCAACAACCTGCACCAAATGAGACAAAGCTCAGAAGGACCTGCAATTTAAAAGACCAATCTGTCAGAAGTCAAAGAGGGCCAGGTAATGTGAAAGCTAATGCAGCGGATTATGGGAATGCTGAAGCAGCTCAGCGGAATCTTCTATATAAAGCTAATGGATTAAATCAAGGGAATGTGCAATCTAAAGCTGCAGTAGTTGAACACAAACAACAGGACATGAGACCACCGAAGAAGGCAAAAACCACAGATAGGGCTCAACCAATAGAAGCCTCTGCCTCCCAAATAGTGCCGATATCACCATCATCATCCCAGTCAACACAGCCATCTGTTTCGCTGCCATTAACTGGAAATCAGTTCATTCATCCCACAACTGTTCTAAAGATGAAGACCAAGCCCCCTTCAAAGAGCAAGAGAGCGCCAGAAAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

202

Amino Acids

22.04

Weight (kDa)

9.68

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024978)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0412771
rosa_samantha Rh4BG175200 Rh4DG172600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
Acc36I ACCTGC 2 cut(s) 193, 224
AccB7I CCANNNNNTGG 1 cut(s) 521
AciI CCGC 2 cut(s) 281, 310
AcuI CTGAAG 2 cut(s) 165, 318
AfiI CCNNNNNNNGG 2 cut(s) 426, 521
AgsI TTSAA 4 cut(s) 103, 179, 377, 579
AjnI CCWGG 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AluBI AGCT 7 cut(s) 63, 167, 205, 272, 305, 329, 365
AluI AGCT 7 cut(s) 63, 167, 205, 272, 305, 329, 365
Alw26I GTCTC 2 cut(s) 191, 391
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 4 cut(s) 278, 302, 365, 511
AspLEI GCGC 1 cut(s) 595
AspS9I GGNCC 2 cut(s) 213, 254
AsuHPI GGTGA 1 cut(s) 465
AvaII GGWCC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 433
BbsI GAAGAC 2 cut(s) 110, 569
BbvI GCAGC 4 cut(s) 290, 314, 352, 498
BccI CCATC 4 cut(s) 11, 34, 484, 508
BciT130I CCWGG 1 cut(s) 258
BciVI GTATCC 1 cut(s) 15
BcoDI GTCTC 2 cut(s) 191, 391
BfmI CTRYAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 596
BfuAI ACCTGC 2 cut(s) 193, 224
BfuI GTATCC 1 cut(s) 15
BglII AGATCT 1 cut(s) 140
BisI GCNGC 4 cut(s) 279, 303, 366, 512
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 4 cut(s) 280, 304, 367, 513
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 213, 254
BmrFI CCNGG 1 cut(s) 258
BmrI ACTGGG 1 cut(s) 481
BmsI GCATC 1 cut(s) 50
BmuI ACTGGG 1 cut(s) 481
BpiI GAAGAC 2 cut(s) 110, 569
Bpu1102I GCTNAGC 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 391
Bsc4I CCNNNNNNNGG 2 cut(s) 426, 521
Bse1I ACTGG 2 cut(s) 487, 526
BseBI CCWGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 482, 538
BseLI CCNNNNNNNGG 2 cut(s) 426, 521
BseMII CTCAG 2 cut(s) 220, 320
BseNI ACTGG 2 cut(s) 487, 526
BseXI GCAGC 4 cut(s) 290, 314, 352, 498
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 426, 521
BsmAI GTCTC 2 cut(s) 191, 391
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 1 cut(s) 256
Bso31I GGTCTC 1 cut(s) 391
Bsp1286I GDGCHC 1 cut(s) 433
Bsp143I GATC 1 cut(s) 140
Bsp1720I GCTNAGC 1 cut(s) 306
BspACI CCGC 2 cut(s) 281, 310
BspANI GGCC 1 cut(s) 256
BspCNI CTCAG 2 cut(s) 219, 319
BspMAI CTGCAG 1 cut(s) 370
BspMI ACCTGC 2 cut(s) 193, 224
BspTNI GGTCTC 1 cut(s) 391
BsrI ACTGG 2 cut(s) 487, 526
BssMI GATC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 550
BstDEI CTNAG 2 cut(s) 206, 306
BstF5I GGATG 2 cut(s) 482, 538
BstH2I RGCGCY 1 cut(s) 596
BstHHI GCGC 1 cut(s) 595
BstKTI GATC 1 cut(s) 143
BstMAI GTCTC 2 cut(s) 191, 391
BstMBI GATC 1 cut(s) 140
BstMWI GCNNNNNNNGC 2 cut(s) 278, 302
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 4 cut(s) 290, 314, 352, 498
BstV2I GAAGAC 2 cut(s) 110, 569
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 256
BtsCI GGATG 2 cut(s) 482, 538
BveI ACCTGC 2 cut(s) 193, 224
CfoI GCGC 1 cut(s) 595
Cfr13I GGNCC 2 cut(s) 213, 254
CseI GACGC 1 cut(s) 47
CviAII CATG 1 cut(s) 394
DdeI CTNAG 2 cut(s) 206, 306
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
DraI TTTAAA 1 cut(s) 225
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 433
Eco31I GGTCTC 1 cut(s) 391
Eco32I GATATC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 213
Eco57I CTGAAG 2 cut(s) 165, 318
EcoO109I RGGNCCY 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 256
EcoRV GATATC 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 433
FaeI CATG 1 cut(s) 397
FaiI YATR 7 cut(s) 46, 54, 130, 288, 322, 324, 395
FatI CATG 1 cut(s) 393
Fnu4HI GCNGC 4 cut(s) 279, 303, 366, 512
FokI GGATG 2 cut(s) 469, 525
FriOI GRGCYC 1 cut(s) 433
Fsp4HI GCNGC 4 cut(s) 279, 303, 366, 512
GlaI GCGC 1 cut(s) 594
GluI GCNGC 4 cut(s) 279, 303, 366, 512
HaeII RGCGCY 1 cut(s) 596
HaeIII GGCC 1 cut(s) 256
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 595
Hin1II CATG 1 cut(s) 397
Hin6I GCGC 1 cut(s) 593
HinP1I GCGC 1 cut(s) 593
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 2 cut(s) 149, 313
HphI GGTGA 1 cut(s) 465
Hpy166II GTNNAC 1 cut(s) 492
Hpy188I TCNGA 3 cut(s) 145, 209, 242
Hpy8I GTNNAC 1 cut(s) 492
HpyAV CCTTC 3 cut(s) 204, 403, 585
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4V TGCA 5 cut(s) 188, 219, 278, 355, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 302
HpyF3I CTNAG 2 cut(s) 206, 306
Hsp92II CATG 1 cut(s) 397
HspAI GCGC 1 cut(s) 593
Kzo9I GATC 1 cut(s) 140
LpnPI CCDG 8 cut(s) 120, 198, 229, 243, 270, 374, 500, 507
Lsp1109I GCAGC 4 cut(s) 290, 314, 352, 498
LweI GCATC 1 cut(s) 50
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MboII GAAGA 5 cut(s) 115, 158, 308, 418, 574
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 433
MluCI AATT 2 cut(s) 119, 220
MnlI CCTC 4 cut(s) 4, 245, 457, 463
MseI TTAA 4 cut(s) 75, 224, 338, 518
MspA1I CMGCKG 2 cut(s) 281, 310
MspR9I CCNGG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 2 cut(s) 278, 302
NdeII GATC 1 cut(s) 140
NlaIII CATG 1 cut(s) 397
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 2 cut(s) 149, 313
PflMI CCANNNNNTGG 1 cut(s) 521
PkrI GCNGC 4 cut(s) 280, 304, 367, 513
PpuMI RGGWCCY 1 cut(s) 213
Psp5II RGGWCCY 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspPI GGNCC 2 cut(s) 213, 254
PspPPI RGGWCCY 1 cut(s) 213
PstI CTGCAG 1 cut(s) 370
PsuI RGATCY 1 cut(s) 140
SaqAI TTAA 4 cut(s) 75, 224, 338, 518
SatI GCNGC 4 cut(s) 279, 303, 366, 512
Sau3AI GATC 1 cut(s) 140
Sau96I GGNCC 2 cut(s) 213, 254
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 1 cut(s) 433
SfaNI GCATC 1 cut(s) 50
SfcI CTRYAG 1 cut(s) 366
SinI GGWCC 1 cut(s) 213
Sse9I AATT 2 cut(s) 119, 220
SsiI CCGC 2 cut(s) 281, 310
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 550
TaqI TCGA 1 cut(s) 152
TasI AATT 2 cut(s) 119, 220
TfiI GAWTC 2 cut(s) 149, 313
Tru1I TTAA 4 cut(s) 75, 224, 338, 518
Tru9I TTAA 4 cut(s) 75, 224, 338, 518
TseI GCWGC 4 cut(s) 278, 302, 365, 511
TspDTI ATGAA 3 cut(s) 523, 527, 575
Van91I CCANNNNNTGG 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.