Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024982

Physical Location & Seq

Genomic Coordinates Reverse (-)

38244449 .. 38245801

Gene Structure 1353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGTCGGGGGTCAGGACAATGTATGAAAACACACAGGGTCTTACCTTTGTTGTAGACAGCAATGACAGAGACCGTGTTGTTGAGGCAAGGGATGGATTGCACAGGATGTCAAATGAGAACACTCGTGCAACCTCTGGAGAGGGTCTATATGAAGGCCTGGATTGGCTCTCCAACAACATTGCTAACAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

64

Amino Acids

7.16

Weight (kDa)

4.87

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	5 - 41	1.7e-06	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024982)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0413871
rosa_samantha	Rh4AG182900 Rh4CG194600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AjnI	CCWGG	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	154
BauI	CACGAG	1 cut(s)	123
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	158
BpmI	CTGGAG	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	63
Bse3DI	GCAATG	2 cut(s)	67, 177
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	2 cut(s)	97, 111
BseMI	GCAATG	2 cut(s)	67, 177
BshFI	GGCC	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	63
BsrDI	GCAATG	2 cut(s)	67, 177
BssSI	CACGAG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	74
BstF5I	GGATG	2 cut(s)	97, 111
BstMAI	GTCTC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	97, 111
CviJI	RGCY	3 cut(s)	156, 166, 191
CviKI_1	RGCY	3 cut(s)	156, 166, 191
Eco147I	AGGCCT	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	156
FaiI	YATR	3 cut(s)	24, 148, 150
FblI	GTMKAC	1 cut(s)	54
FokI	GGATG	2 cut(s)	104, 118
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188III	TCNNGA	2 cut(s)	13, 135
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4V	TGCA	2 cut(s)	100, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
LpnPI	CCDG	5 cut(s)	20, 88, 120, 143, 170
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	3 cut(s)	76, 133, 142
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	2 cut(s)	47, 134
SseBI	AGGCCT	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	39, 165
XmiI	GTMKAC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.