Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022252

Physical Location & Seq

Genomic Coordinates Forward (+)

57593321 .. 57595575

Gene Structure 2255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGACGAAGAAGACAGAGAGGAAAGTGAACGTTTCCGGGAGGCCGAAGCACTCTCTGGACGCGAACCGTACCGATGGGAAGAACAAAGAGCAGCGTAGTGCGGCCACCGTGCGCCGCCTCAAGATGTACAAGGTCAGGCCCAAGCGTGACCGCAAGGGCAAGTTCATCAGCAACGAATTCCAGTCCAAGGCGTTGCCCAACACTCGAATCCAACCCGATCGCCGCTGGTTTGGGAATACTAGGGTCGTGGGCCAGAAGGAGCTTGAAGTCTTTCGTGACGAGCTCGAGAATCACATGTCTAACAGATACAATGTGATTTTGAAGGAGAAGAAATTGCCCATGTCTCTTCTTAATGACCATAAGAAGAAGCACGATAACATTGCTGCAGAAGCAGGCGAAGCGGATGGATTTAGGGACTTAGTTCGCCATACAATGTTTGAGAAGGGACAGAGTAAACGCATTTGGGGCGAGCTCTACAAAGTGGTAGACTCCTCAGATGTTGTTGTCCAGGTTTTGGATGCAAGGGATCCGCAAGGTACAAGATGTTACCACTTAGAGAAGCATTTGAAAGAGCATTGCAAGCATAAACACTTGATTCTCTTGTTAAACAAGCAATATCAGTACTTTTATCTCCAGTGTGATTTGGTTCCCGCTTGGGCAACAAAAGGTTGGCTAAAAGTATTGTCGGCGGAGTTTCCAACTCTTGCATTTCATGCTAGCATCAACAAGTCATTTGGCAAGGGTTCTCTTCTATCTGTGTTGAGGCAATTTTCCCGATTAAAAAGTGACAAGCAAGCAATTTCTGTGGGATTCGTTGGGTATCCCAATGTTGGAAAATCATCTGTTATCAACACACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042254 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NGP1NT

Protein Analysis

286

Amino Acids

33.09

Weight (kDa)

10.04

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NGP1NT	PF08153	42 - 137	5.3e-33	NGP1NT (NUC091) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022252)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33850
rosa_chinensis	RchiOBHm_Chr4g0433481
rosa_samantha	Rh4AG323500 Rh4DG328000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	514
AccI	GTMKAC	1 cut(s)	486
AccII	CGCG	1 cut(s)	62
AciI	CCGC	8 cut(s)	101, 115, 151, 223, 401, 530, 651, 689
AclI	AACGTT	1 cut(s)	30
AclWI	GGATC	2 cut(s)	521, 534
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	176
AdeI	CACNNNGTG	1 cut(s)	858
AfaI	GTAC	4 cut(s)	70, 128, 538, 623
AfiI	CCNNNNNNNGG	3 cut(s)	187, 514, 830
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	3 cut(s)	266, 322, 568
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	3 cut(s)	262, 283, 472
AluI	AGCT	3 cut(s)	262, 283, 472
Alw21I	GWGCWC	2 cut(s)	285, 474
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	521, 534
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	4 cut(s)	41, 102, 137, 250
ApeKI	GCWGC	2 cut(s)	91, 383
ApoI	RAATTY	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	138, 250
AsuC2I	CCSGG	1 cut(s)	37
AsuNHI	GCTAGC	1 cut(s)	716
AvaI	CYCGRG	1 cut(s)	284
BamHI	GGATCC	1 cut(s)	526
BanII	GRGCYC	2 cut(s)	285, 474
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	2 cut(s)	285, 474
BbvI	GCAGC	2 cut(s)	103, 370
BccI	CCATC	2 cut(s)	68, 398
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	1 cut(s)	509
BciVI	GTATCC	1 cut(s)	831
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	240, 717
BfmI	CTRYAG	1 cut(s)	384
BfuI	GTATCC	1 cut(s)	831
BisI	GCNGC	5 cut(s)	92, 102, 115, 223, 384
BlsI	GCNGC	5 cut(s)	93, 103, 116, 224, 385
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	2 cut(s)	37, 509
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	138, 250
BmiI	GGNNCC	2 cut(s)	528, 648
BmrFI	CCNGG	2 cut(s)	37, 509
BmsI	GCATC	2 cut(s)	508, 729
BmtI	GCTAGC	1 cut(s)	720
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 514, 830
Bse1I	ACTGG	2 cut(s)	181, 634
Bse3DI	GCAATG	2 cut(s)	378, 574
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	409, 523
BseLI	CCNNNNNNNGG	3 cut(s)	187, 514, 830
BseMI	GCAATG	2 cut(s)	378, 574
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	181, 634
BseRI	GAGGAG	1 cut(s)	481
BseXI	GCAGC	2 cut(s)	103, 370
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	4 cut(s)	43, 104, 139, 252
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	285, 474
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	2 cut(s)	428, 459
BslI	CCNNNNNNNGG	3 cut(s)	187, 514, 830
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	2 cut(s)	428, 459
BsnI	GGCC	4 cut(s)	43, 104, 139, 252
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	2 cut(s)	285, 474
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	217, 526
BspACI	CCGC	8 cut(s)	101, 115, 151, 223, 401, 530, 651, 689
BspANI	GGCC	4 cut(s)	43, 104, 139, 252
BspCNI	CTCAG	1 cut(s)	506
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	528, 648
BspMAI	CTGCAG	1 cut(s)	388
BspOI	GCTAGC	1 cut(s)	720
BspPI	GGATC	2 cut(s)	521, 534
BsrDI	GCAATG	2 cut(s)	378, 574
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	181, 634
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	217, 526
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	3 cut(s)	68, 109, 858
Bst6I	CTCTTC	2 cut(s)	351, 753
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstAUI	TGTACA	1 cut(s)	126
BstC8I	GCNNGC	5 cut(s)	394, 470, 581, 718, 795
BstDEI	CTNAG	3 cut(s)	418, 493, 553
BstF5I	GGATG	2 cut(s)	409, 523
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	2 cut(s)	220, 529
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	2 cut(s)	217, 526
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	5 cut(s)	389, 398, 465, 580, 713
BstNI	CCWGG	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	35, 507
BstSFI	CTRYAG	1 cut(s)	384
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	103, 370
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuI	GTATCC	1 cut(s)	831
BsuRI	GGCC	4 cut(s)	43, 104, 139, 252
BtsCI	GGATG	2 cut(s)	409, 523
BtsIMutI	CAGTG	2 cut(s)	641, 854
Cac8I	GCNNGC	5 cut(s)	394, 470, 581, 718, 795
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	138, 250
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	4 cut(s)	69, 127, 537, 622
CspCI	CAANNNNNGTGG	2 cut(s)	786, 821
CviAII	CATG	3 cut(s)	295, 340, 713
CviJI	RGCY	8 cut(s)	43, 104, 139, 252, 262, 283, 472, 673
CviKI_1	RGCY	8 cut(s)	43, 104, 139, 252, 262, 283, 472, 673
CviQI	GTAC	4 cut(s)	69, 127, 537, 622
DdeI	CTNAG	3 cut(s)	418, 493, 553
DpnI	GATC	2 cut(s)	219, 528
DpnII	GATC	2 cut(s)	217, 526
DraIII	CACNNNGTG	1 cut(s)	858
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	2 cut(s)	351, 753
EarI	CTCTTC	2 cut(s)	351, 753
EciI	GGCGGA	1 cut(s)	704
Ecl136II	GAGCTC	2 cut(s)	283, 472
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	2 cut(s)	285, 474
Eco53kI	GAGCTC	2 cut(s)	283, 472
Eco88I	CYCGRG	1 cut(s)	284
EcoICRI	GAGCTC	2 cut(s)	283, 472
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	2 cut(s)	285, 474
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	298, 343, 716
FaiI	YATR	6 cut(s)	296, 341, 360, 429, 585, 714
FaqI	GGGAC	2 cut(s)	428, 459
FatI	CATG	3 cut(s)	294, 339, 712
FauI	CCCGC	1 cut(s)	658
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	5 cut(s)	92, 102, 115, 223, 384
FokI	GGATG	2 cut(s)	416, 530
FriOI	GRGCYC	2 cut(s)	285, 474
Fsp4HI	GCNGC	5 cut(s)	92, 102, 115, 223, 384
FspBI	CTAG	2 cut(s)	240, 717
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	5 cut(s)	92, 102, 115, 223, 384
GsuI	CTGGAG	1 cut(s)	617
HaeIII	GGCC	4 cut(s)	43, 104, 139, 252
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	298, 343, 716
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	5 cut(s)	207, 289, 488, 595, 810
HpaII	CCGG	1 cut(s)	36
Hpy166II	GTNNAC	3 cut(s)	28, 455, 487
Hpy188I	TCNGA	1 cut(s)	496
Hpy188III	TCNNGA	5 cut(s)	56, 121, 275, 286, 774
Hpy8I	GTNNAC	3 cut(s)	28, 455, 487
HpyAV	CCTTC	3 cut(s)	250, 316, 436
HpyCH4III	ACNGT	3 cut(s)	68, 109, 858
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	4 cut(s)	386, 521, 579, 707
HpyF10VI	GCNNNNNNNGC	5 cut(s)	389, 398, 465, 580, 713
HpyF3I	CTNAG	3 cut(s)	418, 493, 553
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	298, 343, 716
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	217, 526
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	2 cut(s)	103, 370
LweI	GCATC	2 cut(s)	508, 729
MaeI	CTAG	2 cut(s)	240, 717
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	4 cut(s)	146, 275, 545, 785
MalI	GATC	2 cut(s)	219, 528
MboI	GATC	2 cut(s)	217, 526
MboII	GAAGA	7 cut(s)	19, 22, 91, 338, 340, 376, 740
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	2 cut(s)	285, 474
MluCI	AATT	4 cut(s)	176, 332, 767, 798
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	3 cut(s)	235, 722, 811
MnlI	CCTC	5 cut(s)	12, 33, 128, 502, 756
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	3 cut(s)	351, 605, 779
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	2 cut(s)	37, 509
MvaI	CCWGG	1 cut(s)	509
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	5 cut(s)	389, 398, 465, 580, 713
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	2 cut(s)	217, 526
NheI	GCTAGC	1 cut(s)	716
NlaIII	CATG	3 cut(s)	298, 343, 716
NlaIV	GGNNCC	2 cut(s)	528, 648
NmuCI	GTSAC	3 cut(s)	146, 275, 785
NspI	RCATGY	1 cut(s)	298
PaeR7I	CTCGAG	1 cut(s)	284
PciI	ACATGT	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	4 cut(s)	207, 289, 595, 810
PflMI	CCANNNNNTGG	1 cut(s)	514
PfoI	TCCNGGA	1 cut(s)	35
PkrI	GCNGC	5 cut(s)	93, 103, 116, 224, 385
Ple19I	CGATCG	1 cut(s)	220
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
PscI	ACATGT	1 cut(s)	294
Psp124BI	GAGCTC	2 cut(s)	285, 474
Psp1406I	AACGTT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	2 cut(s)	528, 648
PspPI	GGNCC	2 cut(s)	138, 250
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	526
PvuI	CGATCG	1 cut(s)	220
RsaI	GTAC	4 cut(s)	70, 128, 538, 623
RsaNI	GTAC	4 cut(s)	69, 127, 537, 622
SacI	GAGCTC	2 cut(s)	285, 474
SaqAI	TTAA	3 cut(s)	351, 605, 779
SatI	GCNGC	5 cut(s)	92, 102, 115, 223, 384
Sau3AI	GATC	2 cut(s)	217, 526
Sau96I	GGNCC	2 cut(s)	138, 250
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	2 cut(s)	37, 509
SduI	GDGCHC	2 cut(s)	285, 474
SetI	ASST	8 cut(s)	33, 135, 264, 285, 474, 513, 538, 670
SfaNI	GCATC	2 cut(s)	508, 729
SfcI	CTRYAG	1 cut(s)	384
Sfr274I	CTCGAG	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	2 cut(s)	119, 284
SmoI	CTYRAG	2 cut(s)	119, 284
Sse9I	AATT	4 cut(s)	176, 332, 767, 798
SsiI	CCGC	8 cut(s)	101, 115, 151, 223, 401, 530, 651, 689
SspMI	CTAG	2 cut(s)	240, 717
SstI	GAGCTC	2 cut(s)	285, 474
StyD4I	CCNGG	2 cut(s)	35, 507
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	3 cut(s)	68, 109, 858
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	205, 285
TasI	AATT	4 cut(s)	176, 332, 767, 798
TatI	WGTACW	2 cut(s)	126, 621
TauI	GCSGC	3 cut(s)	104, 117, 225
TfiI	GAWTC	4 cut(s)	207, 289, 595, 810
Tru1I	TTAA	3 cut(s)	351, 605, 779
Tru9I	TTAA	3 cut(s)	351, 605, 779
TscAI	CASTG	2 cut(s)	641, 861
TseFI	GTSAC	3 cut(s)	146, 275, 785
TseI	GCWGC	2 cut(s)	91, 383
Tsp45I	GTSAC	3 cut(s)	146, 275, 785
TspDTI	ATGAA	2 cut(s)	154, 701
TspRI	CASTG	2 cut(s)	641, 861
Van91I	CCANNNNNTGG	1 cut(s)	514
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	298
XhoI	CTCGAG	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	486
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	2 cut(s)	240, 717
ZrmI	AGTACT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.