RchiOBHm_Chr3g0449561

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0024924
Physical Location & Seq
Reverse (-)
1300566 .. 1300889
324 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
ATGGATAGGAATCGTGTTTGCTCCGAGTACTGGGACTCTAGTCCCTACTCCCGACCTCAAGTGCAGATACCACAAAAAGCTCAATCTGAAGAAAGTGGTGAAAACTTGAATAAGATAACGACGGGAAAGAATGCTCATGAGGCCGCCGGCATTAATCTCTTGACTAGTGGGGTTGATACAATACTCGGAGGCCTGTTCAAGAAGGCTAACCTAGAAGAATTAAACTCATTGTACAGCATCTTAAGTGACAATCAGCAGACTGTCGGGCGAGGCCTAATGACACGACTTCTTAATGAAGAGATTCAAACTCGTCGTCCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008198 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034720 GO:0036211 GO:0040008 GO:0040009 GO:0040010 GO:0040029 GO:0042054 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045927 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN JmjC JmjN zf-C5HC2

Protein Analysis

107

Amino Acids

11.94

Weight (kDa)

5.8

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024924)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0449561
rosa_multiflora Rmu_co8158730.1_g000001
rosa_roxburghii Rroxscaffold_6G00427510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 144
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 2 cut(s) 29, 233
AfiI CCNNNNNNNGG 1 cut(s) 30
AflII CTTAAG 1 cut(s) 241
AgsI TTSAA 3 cut(s) 109, 199, 305
AhlI ACTAGT 1 cut(s) 164
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
AoxI GGCC 3 cut(s) 141, 190, 271
ArsI GACNNNNNNTTYG 1 cut(s) 298
AseI ATTAAT 1 cut(s) 153
Asp700I GAANNNNTTC 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 110
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 3 cut(s) 39, 165, 212
BfrI CTTAAG 1 cut(s) 241
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BmcAI AGTACT 1 cut(s) 29
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 246
BmuI ACTGGG 1 cut(s) 40
BoxI GACNNNNGTC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 42
BsaBI GATNNNNATC 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 35
Bse8I GATNNNNATC 1 cut(s) 9
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 35
BsgI GTGCAG 1 cut(s) 83
BshFI GGCC 3 cut(s) 143, 192, 273
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 2 cut(s) 27, 47
BslI CCNNNNNNNGG 1 cut(s) 30
BsmFI GGGAC 2 cut(s) 27, 47
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 3 cut(s) 143, 192, 273
Bsp1407I TGTACA 1 cut(s) 231
BspACI CCGC 1 cut(s) 144
BspANI GGCC 3 cut(s) 143, 192, 273
BspHI TCATGA 1 cut(s) 136
BspTI CTTAAG 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 146
BsrGI TGTACA 1 cut(s) 231
BsrI ACTGG 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 291
BstAFI CTTAAG 1 cut(s) 241
BstAUI TGTACA 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstPAI GACNNNNGTC 1 cut(s) 39
BsuRI GGCC 3 cut(s) 143, 192, 273
Cac8I GCNNGC 1 cut(s) 148
CciI TCATGA 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 146
Csp6I GTAC 2 cut(s) 28, 232
CviAII CATG 2 cut(s) 137, 321
CviJI RGCY 5 cut(s) 80, 143, 192, 206, 273
CviKI_1 RGCY 5 cut(s) 80, 143, 192, 206, 273
CviQI GTAC 2 cut(s) 28, 232
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco147I AGGCCT 2 cut(s) 192, 273
Eco57I CTGAAG 1 cut(s) 108
FaeI CATG 2 cut(s) 140, 324
FaiI YATR 2 cut(s) 138, 322
FaqI GGGAC 2 cut(s) 27, 47
FatI CATG 2 cut(s) 136, 320
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 3 cut(s) 39, 165, 212
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 3 cut(s) 143, 192, 273
HapII CCGG 1 cut(s) 147
Hin1II CATG 2 cut(s) 140, 324
HinfI GANTC 3 cut(s) 10, 35, 301
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 3 cut(s) 25, 88, 188
Hpy188III TCNNGA 4 cut(s) 51, 137, 160, 199
Hpy99I CGWCG 2 cut(s) 124, 315
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
Hsp92II CATG 2 cut(s) 140, 324
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 3 cut(s) 16, 160, 206
LweI GCATC 1 cut(s) 246
MaeI CTAG 3 cut(s) 39, 165, 212
MaeIII GTNAC 1 cut(s) 245
MboII GAAGA 3 cut(s) 101, 227, 308
MluCI AATT 1 cut(s) 218
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 4 cut(s) 66, 133, 182, 263
MroNI GCCGGC 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 4 cut(s) 153, 221, 242, 291
MspCI CTTAAG 1 cut(s) 241
MspI CCGG 1 cut(s) 147
Mva1269I GAATGC 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 140
NaeI GCCGGC 1 cut(s) 148
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 2 cut(s) 140, 324
NmuCI GTSAC 1 cut(s) 245
PagI TCATGA 1 cut(s) 136
PceI AGGCCT 2 cut(s) 192, 273
PctI GAATGC 1 cut(s) 136
PdiI GCCGGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 2 cut(s) 10, 301
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PshAI GACNNNNGTC 1 cut(s) 39
PshBI ATTAAT 1 cut(s) 153
RsaI GTAC 2 cut(s) 29, 233
RsaNI GTAC 2 cut(s) 28, 232
SaqAI TTAA 4 cut(s) 153, 221, 242, 291
SatI GCNGC 1 cut(s) 144
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 1 cut(s) 29
SetI ASST 3 cut(s) 58, 82, 213
SfaNI GCATC 1 cut(s) 246
SmlI CTYRAG 2 cut(s) 57, 241
SmoI CTYRAG 2 cut(s) 57, 241
SpeI ACTAGT 1 cut(s) 164
Sse9I AATT 1 cut(s) 218
SseBI AGGCCT 2 cut(s) 192, 273
SsiI CCGC 1 cut(s) 144
SspMI CTAG 3 cut(s) 39, 165, 212
StuI AGGCCT 2 cut(s) 192, 273
TaaI ACNGT 1 cut(s) 262
TasI AATT 1 cut(s) 218
TatI WGTACW 2 cut(s) 27, 231
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 2 cut(s) 10, 301
Tru1I TTAA 4 cut(s) 153, 221, 242, 291
Tru9I TTAA 4 cut(s) 153, 221, 242, 291
TseFI GTSAC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 309
Vha464I CTTAAG 1 cut(s) 241
VspI ATTAAT 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 3 cut(s) 39, 165, 212
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.