Rmu_co8158730.1_g000001

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8158730.1
OG0024924
Physical Location & Seq
Forward (+)
1 .. 429
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8158730.1_g000001.1.cds

Sequence Viewer

Length: 336 bp
gccatagagacaatggataggaatcgcgtttgctccgagtactgggactctagtccctactcccgacctcaagtgcagataccacaaaaagctcaatctgaagaaagtggtgaaaacttgaataagataacgacgggaaagaatgctcatgaggccgccggcattaatctcttgactagtggggttgatacaatactcggaggcctgttcaagaaggctaacctagaagaattaaactcactgtacagcatcttaagtgacaatcagcagactgtcgggcgaggcctaatgacacgacttcttaatgaagagattcaaactcgtcgtccaacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008198 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034720 GO:0036211 GO:0040008 GO:0040009 GO:0040010 GO:0040029 GO:0042054 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045927 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN JmjC JmjN zf-C5HC2

Protein Analysis

111

Amino Acids

12.35

Weight (kDa)

5.39

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024924)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0449561
rosa_multiflora Rmu_co8158730.1_g000001
rosa_roxburghii Rroxscaffold_6G00427510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 27
AciI CCGC 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 2 cut(s) 41, 245
AfiI CCNNNNNNNGG 1 cut(s) 42
AflII CTTAAG 1 cut(s) 253
AgsI TTSAA 3 cut(s) 121, 211, 317
AhlI ACTAGT 1 cut(s) 176
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 2
AoxI GGCC 3 cut(s) 153, 202, 283
ArsI GACNNNNNNTTYG 1 cut(s) 310
AseI ATTAAT 1 cut(s) 165
Asp700I GAANNNNTTC 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 2
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 3 cut(s) 51, 177, 224
BfrI CTTAAG 1 cut(s) 253
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmcAI AGTACT 1 cut(s) 41
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 258
BmuI ACTGGG 1 cut(s) 52
BoxI GACNNNNGTC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 47
Bse8I GATNNNNATC 1 cut(s) 21
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 3 cut(s) 155, 204, 285
BsiSI CCGG 1 cut(s) 159
BslFI GGGAC 2 cut(s) 39, 59
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 2
BsmFI GGGAC 2 cut(s) 39, 59
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 3 cut(s) 155, 204, 285
Bsp1407I TGTACA 1 cut(s) 243
BspACI CCGC 1 cut(s) 156
BspANI GGCC 3 cut(s) 155, 204, 285
BspFNI CGCG 1 cut(s) 27
BspHI TCATGA 1 cut(s) 148
BspTI CTTAAG 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 158
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 158
Bst4CI ACNGT 2 cut(s) 243, 274
Bst6I CTCTTC 1 cut(s) 303
BstAFI CTTAAG 1 cut(s) 253
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 160
BstFNI CGCG 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 2
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstPAI GACNNNNGTC 1 cut(s) 51
BstUI CGCG 1 cut(s) 27
BsuRI GGCC 3 cut(s) 155, 204, 285
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 160
CciI TCATGA 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 158
Csp6I GTAC 2 cut(s) 40, 244
CviAII CATG 2 cut(s) 149, 333
CviJI RGCY 5 cut(s) 92, 155, 204, 218, 285
CviKI_1 RGCY 5 cut(s) 92, 155, 204, 218, 285
CviQI GTAC 2 cut(s) 40, 244
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco147I AGGCCT 2 cut(s) 204, 285
Eco57I CTGAAG 1 cut(s) 120
FaeI CATG 2 cut(s) 152, 336
FaiI YATR 3 cut(s) 5, 150, 334
FaqI GGGAC 2 cut(s) 39, 59
FatI CATG 2 cut(s) 148, 332
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 3 cut(s) 51, 177, 224
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 3 cut(s) 155, 204, 285
HapII CCGG 1 cut(s) 159
Hin1II CATG 2 cut(s) 152, 336
HinfI GANTC 3 cut(s) 22, 47, 313
HpaII CCGG 1 cut(s) 159
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 3 cut(s) 37, 100, 200
Hpy188III TCNNGA 4 cut(s) 63, 149, 172, 211
Hpy99I CGWCG 2 cut(s) 136, 327
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 2 cut(s) 243, 274
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
Hsp92II CATG 2 cut(s) 152, 336
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 3 cut(s) 28, 172, 218
LweI GCATC 1 cut(s) 258
MaeI CTAG 3 cut(s) 51, 177, 224
MaeIII GTNAC 1 cut(s) 257
MboII GAAGA 3 cut(s) 113, 239, 320
MluCI AATT 1 cut(s) 230
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 4 cut(s) 78, 145, 194, 275
MroNI GCCGGC 1 cut(s) 158
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 4 cut(s) 165, 233, 254, 303
MspCI CTTAAG 1 cut(s) 253
MspI CCGG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 148
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 152
NaeI GCCGGC 1 cut(s) 160
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 2 cut(s) 152, 336
NmuCI GTSAC 1 cut(s) 257
PagI TCATGA 1 cut(s) 148
PceI AGGCCT 2 cut(s) 204, 285
PctI GAATGC 1 cut(s) 148
PdiI GCCGGC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 2 cut(s) 22, 313
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PshAI GACNNNNGTC 1 cut(s) 51
PshBI ATTAAT 1 cut(s) 165
RsaI GTAC 2 cut(s) 41, 245
RsaNI GTAC 2 cut(s) 40, 244
SaqAI TTAA 4 cut(s) 165, 233, 254, 303
SatI GCNGC 1 cut(s) 156
ScaI AGTACT 1 cut(s) 41
SchI GAGTC 1 cut(s) 41
SetI ASST 3 cut(s) 70, 94, 225
SfaNI GCATC 1 cut(s) 258
SmlI CTYRAG 2 cut(s) 69, 253
SmoI CTYRAG 2 cut(s) 69, 253
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 1 cut(s) 230
SseBI AGGCCT 2 cut(s) 204, 285
SsiI CCGC 1 cut(s) 156
SspMI CTAG 3 cut(s) 51, 177, 224
StuI AGGCCT 2 cut(s) 204, 285
TaaI ACNGT 2 cut(s) 243, 274
TasI AATT 1 cut(s) 230
TatI WGTACW 2 cut(s) 39, 243
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 2 cut(s) 22, 313
Tru1I TTAA 4 cut(s) 165, 233, 254, 303
Tru9I TTAA 4 cut(s) 165, 233, 254, 303
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 321
TspRI CASTG 1 cut(s) 246
Vha464I CTTAAG 1 cut(s) 253
VspI ATTAAT 1 cut(s) 165
XcmI CCANNNNNNNNNTGG 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 3 cut(s) 51, 177, 224
ZrmI AGTACT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.