Rroxscaffold_6G00427510

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0024924
Physical Location & Seq
Reverse (-)
48083700 .. 48084476
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00427510.1

Sequence Viewer

Length: 471 bp
ATGGTGAGAGAGAGAGTCAATCAAGAAATCTCAAGGCACCACAAGTTGGGAAGACCAAACCTTCCTCCTTTGCAGCCACCTGGGAGTCTTGATGGCTTTGAAATGTTTGGTTTTACTTCACCGGTTATTGTACAGGCCATAGAGGCAATGGATAGGAATCGCGTTTGCTCCGAGTACTGGGACTCTCGTCCCTACTCCCGACCTCAAGTGCAGATACCACAAAAAGCTCAATCTGAAGAAAGTGGTGAAAACTTGAATAAGATAACGACGGGAAGGAATGCTCATGAGGCCGCCGGCATTAATCTCTTGACTAGTGGGGTTGATACAATACTCGGAGGCCTGTTCAAGAAGGCTAACCTAGAAGAATTAAACTCACTGTACAGCATCTTAAGTGACAATCAGCAGACCGTCGGGCGAGGCCTAGTGACACGACTTCTTAATGAAGAGATTCAAACTCGTCGTCCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008198 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034720 GO:0036211 GO:0040008 GO:0040009 GO:0040010 GO:0040029 GO:0042054 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045927 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN JmjC JmjN zf-C5HC2

Protein Analysis

156

Amino Acids

17.48

Weight (kDa)

6.84

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FYRC PF05965 1 - 59 3.7e-11 F/Y rich C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024924)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0449561
rosa_multiflora Rmu_co8158730.1_g000001
rosa_roxburghii Rroxscaffold_6G00427510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 36
AccB7I CCANNNNNTGG 1 cut(s) 46
AccII CGCG 1 cut(s) 162
AciI CCGC 1 cut(s) 291
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 3 cut(s) 132, 176, 380
AfiI CCNNNNNNNGG 2 cut(s) 46, 177
AflII CTTAAG 1 cut(s) 388
AgeI ACCGGT 1 cut(s) 121
AgsI TTSAA 4 cut(s) 101, 256, 346, 452
AhlI ACTAGT 1 cut(s) 311
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
AoxI GGCC 4 cut(s) 135, 288, 337, 418
ApeKI GCWGC 1 cut(s) 73
ArsI GACNNNNNNTTYG 1 cut(s) 445
AseI ATTAAT 1 cut(s) 300
AsiGI ACCGGT 1 cut(s) 121
Asp700I GAANNNNTTC 1 cut(s) 447
AsuHPI GGTGA 3 cut(s) 16, 111, 257
BanI GGYRCC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 85
BccI CCATC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 81
BcuI ACTAGT 1 cut(s) 311
BfaI CTAG 3 cut(s) 312, 359, 422
BfrI CTTAAG 1 cut(s) 388
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 2 cut(s) 74, 291
BlsI GCNGC 2 cut(s) 75, 292
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 81
BmrI ACTGGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 393
BmuI ACTGGG 1 cut(s) 187
BoxI GACNNNNGTC 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 58
BpuEI CTTGAG 2 cut(s) 16, 189
BsaBI GATNNNNATC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 121
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 177
Bse118I RCCGGY 2 cut(s) 121, 293
Bse1I ACTGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 156
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 80
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 2 cut(s) 46, 177
BseMI GCAATG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 4 cut(s) 137, 290, 339, 420
BshNI GGYRCC 1 cut(s) 36
BshTI ACCGGT 1 cut(s) 121
BsiSI CCGG 2 cut(s) 122, 294
BslFI GGGAC 2 cut(s) 174, 194
BslI CCNNNNNNNGG 2 cut(s) 46, 177
BsmFI GGGAC 2 cut(s) 174, 194
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 4 cut(s) 137, 290, 339, 420
Bsp1407I TGTACA 2 cut(s) 130, 378
BspACI CCGC 1 cut(s) 291
BspANI GGCC 4 cut(s) 137, 290, 339, 420
BspFNI CGCG 1 cut(s) 162
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 36
BspTI CTTAAG 1 cut(s) 388
BsrDI GCAATG 1 cut(s) 153
BsrFI RCCGGY 2 cut(s) 121, 293
BsrGI TGTACA 2 cut(s) 130, 378
BsrI ACTGG 1 cut(s) 182
BssAI RCCGGY 2 cut(s) 121, 293
BssECI CCNNGG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 378, 409
Bst6I CTCTTC 1 cut(s) 438
BstAFI CTTAAG 1 cut(s) 388
BstAUI TGTACA 2 cut(s) 130, 378
BstC8I GCNNGC 1 cut(s) 295
BstFNI CGCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 2 cut(s) 143, 287
BstNI CCWGG 1 cut(s) 81
BstPAI GACNNNNGTC 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 79
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 85
BstV2I GAAGAC 1 cut(s) 58
BsuRI GGCC 4 cut(s) 137, 290, 339, 420
BtsIMutI CAGTG 1 cut(s) 374
Cac8I GCNNGC 1 cut(s) 295
CciI TCATGA 1 cut(s) 283
Cfr10I RCCGGY 2 cut(s) 121, 293
Csp6I GTAC 3 cut(s) 131, 175, 379
CspAI ACCGGT 1 cut(s) 121
CviAII CATG 2 cut(s) 284, 468
CviJI RGCY 8 cut(s) 76, 96, 137, 227, 290, 339, 353, 420
CviKI_1 RGCY 8 cut(s) 76, 96, 137, 227, 290, 339, 353, 420
CviQI GTAC 3 cut(s) 131, 175, 379
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco147I AGGCCT 2 cut(s) 339, 420
Eco57I CTGAAG 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 79
FaeI CATG 2 cut(s) 287, 471
FaiI YATR 3 cut(s) 140, 285, 469
FaqI GGGAC 2 cut(s) 174, 194
FatI CATG 2 cut(s) 283, 467
Fnu4HI GCNGC 2 cut(s) 74, 291
Fsp4HI GCNGC 2 cut(s) 74, 291
FspBI CTAG 3 cut(s) 312, 359, 422
GluI GCNGC 2 cut(s) 74, 291
HaeIII GGCC 4 cut(s) 137, 290, 339, 420
HapII CCGG 2 cut(s) 122, 294
Hin1II CATG 2 cut(s) 287, 471
HinfI GANTC 5 cut(s) 15, 85, 157, 182, 448
HpaII CCGG 2 cut(s) 122, 294
HphI GGTGA 3 cut(s) 16, 111, 257
Hpy188I TCNGA 3 cut(s) 172, 235, 335
Hpy188III TCNNGA 6 cut(s) 23, 89, 198, 284, 307, 346
Hpy99I CGWCG 3 cut(s) 271, 413, 462
HpyAV CCTTC 3 cut(s) 71, 267, 343
HpyCH4III ACNGT 2 cut(s) 378, 409
HpyCH4V TGCA 2 cut(s) 73, 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 287
Hsp92II CATG 2 cut(s) 287, 471
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 7 cut(s) 66, 93, 119, 135, 163, 307, 353
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 1 cut(s) 393
MaeI CTAG 3 cut(s) 312, 359, 422
MaeIII GTNAC 2 cut(s) 392, 424
MboII GAAGA 4 cut(s) 63, 248, 374, 455
MluCI AATT 1 cut(s) 365
MlyI GAGTC 3 cut(s) 24, 94, 176
MnlI CCTC 6 cut(s) 75, 136, 213, 280, 329, 410
MroNI GCCGGC 1 cut(s) 293
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 4 cut(s) 300, 368, 389, 438
MspCI CTTAAG 1 cut(s) 388
MspI CCGG 2 cut(s) 122, 294
MspR9I CCNGG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 283
MvaI CCWGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 143, 287
NaeI GCCGGC 1 cut(s) 295
NgoMIV GCCGGC 1 cut(s) 293
NlaIII CATG 2 cut(s) 287, 471
NlaIV GGNNCC 1 cut(s) 38
NmuCI GTSAC 2 cut(s) 392, 424
PagI TCATGA 1 cut(s) 283
PceI AGGCCT 2 cut(s) 339, 420
PctI GAATGC 1 cut(s) 283
PdiI GCCGGC 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 2 cut(s) 157, 448
PflMI CCANNNNNTGG 1 cut(s) 46
PinAI ACCGGT 1 cut(s) 121
PkrI GCNGC 2 cut(s) 75, 292
PleI GAGTC 3 cut(s) 23, 93, 176
PpsI GAGTC 3 cut(s) 23, 93, 176
PshAI GACNNNNGTC 1 cut(s) 186
PshBI ATTAAT 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 38
RsaI GTAC 3 cut(s) 132, 176, 380
RsaNI GTAC 3 cut(s) 131, 175, 379
SaqAI TTAA 4 cut(s) 300, 368, 389, 438
SatI GCNGC 2 cut(s) 74, 291
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 3 cut(s) 24, 94, 176
ScrFI CCNGG 1 cut(s) 81
SetI ASST 5 cut(s) 63, 82, 205, 229, 360
SfaNI GCATC 1 cut(s) 393
SmlI CTYRAG 3 cut(s) 31, 204, 388
SmoI CTYRAG 3 cut(s) 31, 204, 388
SpeI ACTAGT 1 cut(s) 311
Sse9I AATT 1 cut(s) 365
SseBI AGGCCT 2 cut(s) 339, 420
SsiI CCGC 1 cut(s) 291
SspMI CTAG 3 cut(s) 312, 359, 422
StuI AGGCCT 2 cut(s) 339, 420
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 2 cut(s) 378, 409
TasI AATT 1 cut(s) 365
TatI WGTACW 3 cut(s) 130, 174, 378
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 2 cut(s) 157, 448
Tru1I TTAA 4 cut(s) 300, 368, 389, 438
Tru9I TTAA 4 cut(s) 300, 368, 389, 438
TscAI CASTG 1 cut(s) 381
TseFI GTSAC 2 cut(s) 392, 424
TseI GCWGC 1 cut(s) 73
Tsp45I GTSAC 2 cut(s) 392, 424
TspDTI ATGAA 1 cut(s) 456
TspRI CASTG 1 cut(s) 381
Van91I CCANNNNNTGG 1 cut(s) 46
Vha464I CTTAAG 1 cut(s) 388
VspI ATTAAT 1 cut(s) 300
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 3 cut(s) 312, 359, 422
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.