RchiOBHm_Chr3g0476171

Protein virilizer homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0030001
Physical Location & Seq
Reverse (-)
22133580 .. 22145429
11850 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 666 bp
ATGGACTTATTTGTGGAAATTACATCATCTATTGAGGCCATTATTCTTTCCCTTCTGTTTTGTCGCTCAGGCCTAATTTTCCTGCTACAGCACCCTGAACTTTCCGCAACTATAATACATGCCCTAAGGGGTGGTGATAATGTGAACAAGGATGTGTGTCTTCCTCTTCGACATGCATCTGTTTCCATATCCAAAGGATTCTTTTCCATTCCACAGGAGGTTGGAATGATTGTTGGGATGCATTTGAGGGTGGTTAACGCCATAGATCGTTTGCTTACTGCGGCTCCAAACACTGAAGAATTTTTATGGGTGTTGTGGGAACTATGTGCTCTTGCAAGGTCTGACTGTGGACGCCAGGCACTGTTGGCTTTGGGATATTTTCCAGAGGCTGTTAAAATTTTGATTGAAGCATTACATTCTGCCAAGGAACCGGAGCCGCTTACTAAAAATAGTGGAGCCTCACCGTTAAATCTTGCGATATTTCACTCAGCTGCCGAGATCTTTGAAGTTATTGTTTCTGATTCAACTGCATCTTCTCTTGGATCCTGGATTGGACATGTTACGGAGCTCCATAGGGCTTTCCATTCCTCTTCTCCAGGGTCAAATAGGAAAGATGCCCCCACACGGATGTTGGAATGGATAGATGGCTGGAGTAGTATATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VIR_N

Protein Analysis

221

Amino Acids

24.13

Weight (kDa)

5.68

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030001)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0476171
rosa_samantha Rh3BG234600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 105, 281, 437
AclWI GGATC 2 cut(s) 537, 550
AcsI RAATTY 2 cut(s) 299, 396
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 624
AflIII ACRYGT 1 cut(s) 556
AgsI TTSAA 3 cut(s) 407, 506, 525
AjnI CCWGG 3 cut(s) 354, 545, 595
AluBI AGCT 2 cut(s) 491, 568
AluI AGCT 2 cut(s) 491, 568
Alw21I GWGCWC 2 cut(s) 331, 570
AlwI GGATC 2 cut(s) 537, 550
AlwNI CAGNNNCTG 2 cut(s) 361, 389
AoxI GGCC 2 cut(s) 36, 70
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 2 cut(s) 299, 396
AsuHPI GGTGA 2 cut(s) 146, 453
AxyI CCTNAGG 1 cut(s) 125
BamHI GGATCC 1 cut(s) 542
BanII GRGCYC 1 cut(s) 570
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 2 cut(s) 331, 570
BbvI GCAGC 1 cut(s) 478
BccI CCATC 1 cut(s) 638
BciT130I CCWGG 3 cut(s) 356, 547, 597
BfmI CTRYAG 1 cut(s) 86
BglII AGATCT 1 cut(s) 498
BisI GCNGC 3 cut(s) 282, 437, 492
BlsI GCNGC 3 cut(s) 283, 438, 493
Bme1390I CCNGG 3 cut(s) 356, 547, 597
BmiI GGNNCC 5 cut(s) 285, 429, 435, 457, 544
BmrFI CCNGG 3 cut(s) 356, 547, 597
BmsI GCATC 4 cut(s) 185, 228, 539, 604
BpiI GAAGAC 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 579
Bpu10I CCTNAGC 1 cut(s) 67
BsaHI GRCGYC 1 cut(s) 352
BsaJI CCNNGG 2 cut(s) 423, 596
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 624
Bse21I CCTNAGG 1 cut(s) 125
BseBI CCWGG 3 cut(s) 356, 547, 597
BseDI CCNNGG 2 cut(s) 423, 596
BseGI GGATG 3 cut(s) 157, 243, 633
BseLI CCNNNNNNNGG 1 cut(s) 624
BseMII CTCAG 2 cut(s) 81, 501
BseXI GCAGC 1 cut(s) 478
BshFI GGCC 2 cut(s) 38, 72
BsiHKAI GWGCWC 2 cut(s) 331, 570
BsiSI CCGG 1 cut(s) 431
BslI CCNNNNNNNGG 1 cut(s) 624
BsnI GGCC 2 cut(s) 38, 72
Bsp1286I GDGCHC 2 cut(s) 331, 570
Bsp143I GATC 3 cut(s) 265, 498, 542
BspACI CCGC 3 cut(s) 105, 281, 437
BspANI GGCC 2 cut(s) 38, 72
BspCNI CTCAG 2 cut(s) 80, 500
BspLI GGNNCC 5 cut(s) 285, 429, 435, 457, 544
BspPI GGATC 2 cut(s) 537, 550
BssECI CCNNGG 2 cut(s) 423, 596
BssMI GATC 3 cut(s) 265, 498, 542
BssNI GRCGYC 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 423
Bst2UI CCWGG 3 cut(s) 356, 547, 597
Bst4CI ACNGT 3 cut(s) 347, 363, 465
Bst6I CTCTTC 2 cut(s) 171, 595
BstACI GRCGYC 1 cut(s) 352
BstDEI CTNAG 3 cut(s) 67, 125, 487
BstF5I GGATG 3 cut(s) 157, 243, 633
BstKTI GATC 3 cut(s) 268, 501, 545
BstMBI GATC 3 cut(s) 265, 498, 542
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNI CCWGG 3 cut(s) 356, 547, 597
BstNSI RCATGY 3 cut(s) 122, 176, 560
BstSCI CCNGG 3 cut(s) 354, 545, 595
BstSFI CTRYAG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 2 cut(s) 498, 542
BstYI RGATCY 2 cut(s) 498, 542
Bsu36I CCTNAGG 1 cut(s) 125
BsuRI GGCC 2 cut(s) 38, 72
BtsCI GGATG 3 cut(s) 157, 243, 633
BtsIMutI CAGTG 2 cut(s) 291, 359
CaiI CAGNNNCTG 2 cut(s) 361, 389
CseI GACGC 1 cut(s) 360
CviAII CATG 3 cut(s) 119, 173, 557
DdeI CTNAG 3 cut(s) 67, 125, 487
DpnI GATC 3 cut(s) 267, 500, 544
DpnII GATC 3 cut(s) 265, 498, 542
Eam1104I CTCTTC 2 cut(s) 171, 595
EarI CTCTTC 2 cut(s) 171, 595
Ecl136II GAGCTC 1 cut(s) 568
Eco130I CCWWGG 1 cut(s) 423
Eco147I AGGCCT 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 570
Eco53kI GAGCTC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 315
Eco81I CCTNAGG 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 568
EcoRII CCWGG 3 cut(s) 354, 545, 595
EcoT14I CCWWGG 1 cut(s) 423
EcoT22I ATGCAT 2 cut(s) 178, 243
EcoT38I GRGCYC 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 3 cut(s) 122, 176, 560
FatI CATG 3 cut(s) 118, 172, 556
Fnu4HI GCNGC 3 cut(s) 282, 437, 492
FokI GGATG 3 cut(s) 164, 250, 640
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 3 cut(s) 282, 437, 492
GluI GCNGC 3 cut(s) 282, 437, 492
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 2 cut(s) 38, 72
HapII CCGG 1 cut(s) 431
HgaI GACGC 1 cut(s) 360
Hin1I GRCGYC 1 cut(s) 352
Hin1II CATG 3 cut(s) 122, 176, 560
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 2 cut(s) 198, 521
HpaI GTTAAC 1 cut(s) 256
HpaII CCGG 1 cut(s) 431
HphI GGTGA 2 cut(s) 146, 453
Hpy166II GTNNAC 3 cut(s) 145, 256, 350
Hpy188I TCNGA 2 cut(s) 343, 520
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 3 cut(s) 145, 256, 350
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 3 cut(s) 347, 363, 465
HpyCH4V TGCA 4 cut(s) 176, 241, 335, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 3 cut(s) 67, 125, 487
Hsp92I GRCGYC 1 cut(s) 352
Hsp92II CATG 3 cut(s) 122, 176, 560
KspAI GTTAAC 1 cut(s) 256
Kzo9I GATC 3 cut(s) 265, 498, 542
LmnI GCTCC 5 cut(s) 289, 433, 455, 565, 573
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 4 cut(s) 185, 228, 539, 604
MaeIII GTNAC 1 cut(s) 559
MalI GATC 3 cut(s) 267, 500, 544
MboI GATC 3 cut(s) 265, 498, 542
MboII GAAGA 5 cut(s) 152, 158, 308, 525, 582
MflI RGATCY 2 cut(s) 498, 542
MhlI GDGCHC 2 cut(s) 331, 570
MluCI AATT 4 cut(s) 18, 75, 299, 396
MmeI TCCRAC 2 cut(s) 202, 612
MnlI CCTC 7 cut(s) 28, 174, 211, 240, 379, 469, 598
Mph1103I ATGCAT 2 cut(s) 178, 243
MseI TTAA 3 cut(s) 255, 393, 467
MslI CAYNNNNRTG 1 cut(s) 626
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 3 cut(s) 356, 547, 597
MvaI CCWGG 3 cut(s) 356, 547, 597
MwoI GCNNNNNNNGC 1 cut(s) 365
NdeII GATC 3 cut(s) 265, 498, 542
NlaIII CATG 3 cut(s) 122, 176, 560
NlaIV GGNNCC 5 cut(s) 285, 429, 435, 457, 544
NmeAIII GCCGAG 1 cut(s) 520
NsiI ATGCAT 2 cut(s) 178, 243
NspI RCATGY 3 cut(s) 122, 176, 560
PceI AGGCCT 1 cut(s) 72
PciI ACATGT 1 cut(s) 556
PfeI GAWTC 2 cut(s) 198, 521
PfoI TCCNGGA 1 cut(s) 545
PkrI GCNGC 3 cut(s) 283, 438, 493
PscI ACATGT 1 cut(s) 556
Psp124BI GAGCTC 1 cut(s) 570
Psp6I CCWGG 3 cut(s) 354, 545, 595
PspGI CCWGG 3 cut(s) 354, 545, 595
PspN4I GGNNCC 5 cut(s) 285, 429, 435, 457, 544
PstNI CAGNNNCTG 2 cut(s) 361, 389
PsuI RGATCY 2 cut(s) 498, 542
PvuII CAGCTG 1 cut(s) 491
RseI CAYNNNNRTG 1 cut(s) 626
SacI GAGCTC 1 cut(s) 570
SaqAI TTAA 3 cut(s) 255, 393, 467
SatI GCNGC 3 cut(s) 282, 437, 492
Sau3AI GATC 3 cut(s) 265, 498, 542
ScrFI CCNGG 3 cut(s) 356, 547, 597
SduI GDGCHC 2 cut(s) 331, 570
SetI ASST 4 cut(s) 222, 341, 493, 570
SfaNI GCATC 4 cut(s) 185, 228, 539, 604
SfcI CTRYAG 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 626
Sse9I AATT 4 cut(s) 18, 75, 299, 396
SseBI AGGCCT 1 cut(s) 72
SsiI CCGC 3 cut(s) 105, 281, 437
SstI GAGCTC 1 cut(s) 570
StuI AGGCCT 1 cut(s) 72
StyD4I CCNGG 3 cut(s) 354, 545, 595
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 3 cut(s) 347, 363, 465
TaqI TCGA 1 cut(s) 169
TasI AATT 4 cut(s) 18, 75, 299, 396
TauI GCSGC 2 cut(s) 284, 439
TfiI GAWTC 2 cut(s) 198, 521
Tru1I TTAA 3 cut(s) 255, 393, 467
Tru9I TTAA 3 cut(s) 255, 393, 467
TscAI CASTG 2 cut(s) 298, 366
TseI GCWGC 1 cut(s) 491
TspGWI ACGGA 2 cut(s) 578, 640
TspRI CASTG 2 cut(s) 298, 366
XapI RAATTY 2 cut(s) 299, 396
XceI RCATGY 3 cut(s) 122, 176, 560
XcmI CCANNNNNNNNNTGG 1 cut(s) 628
Zsp2I ATGCAT 2 cut(s) 178, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.