RchiOBHm_Chr3g0476171

Protein virilizer homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0030001
Physical Location & Seq
Reverse (-)
22133580 .. 22145429
11850 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44160

Sequence Viewer

Length: 666 bp
ATGGACTTATTTGTGGAAATTACATCATCTATTGAGGCCATTATTCTTTCCCTTCTGTTTTGTCGCTCAGGCCTAATTTTCCTGCTACAGCACCCTGAACTTTCCGCAACTATAATACATGCCCTAAGGGGTGGTGATAATGTGAACAAGGATGTGTGTCTTCCTCTTCGACATGCATCTGTTTCCATATCCAAAGGATTCTTTTCCATTCCACAGGAGGTTGGAATGATTGTTGGGATGCATTTGAGGGTGGTTAACGCCATAGATCGTTTGCTTACTGCGGCTCCAAACACTGAAGAATTTTTATGGGTGTTGTGGGAACTATGTGCTCTTGCAAGGTCTGACTGTGGACGCCAGGCACTGTTGGCTTTGGGATATTTTCCAGAGGCTGTTAAAATTTTGATTGAAGCATTACATTCTGCCAAGGAACCGGAGCCGCTTACTAAAAATAGTGGAGCCTCACCGTTAAATCTTGCGATATTTCACTCAGCTGCCGAGATCTTTGAAGTTATTGTTTCTGATTCAACTGCATCTTCTCTTGGATCCTGGATTGGACATGTTACGGAGCTCCATAGGGCTTTCCATTCCTCTTCTCCAGGGTCAAATAGGAAAGATGCCCCCACACGGATGTTGGAATGGATAGATGGCTGGAGTAGTATATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VIR_N

Protein Analysis

221

Amino Acids

24.13

Weight (kDa)

5.68

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030001)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0476171
rosa_samantha Rh3BG234600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 105, 281, 437
AclWI GGATC 2 cut(s) 537, 550
AcsI RAATTY 2 cut(s) 299, 396
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 624
AflIII ACRYGT 1 cut(s) 556
AgsI TTSAA 3 cut(s) 407, 506, 525
AjnI CCWGG 3 cut(s) 354, 545, 595
AluBI AGCT 2 cut(s) 491, 568
AluI AGCT 2 cut(s) 491, 568
Alw21I GWGCWC 2 cut(s) 331, 570
AlwI GGATC 2 cut(s) 537, 550
AlwNI CAGNNNCTG 2 cut(s) 361, 389
AoxI GGCC 2 cut(s) 36, 70
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 2 cut(s) 299, 396
AsuHPI GGTGA 2 cut(s) 146, 453
AxyI CCTNAGG 1 cut(s) 125
BamHI GGATCC 1 cut(s) 542
BanII GRGCYC 1 cut(s) 570
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 2 cut(s) 331, 570
BbvI GCAGC 1 cut(s) 478
BccI CCATC 1 cut(s) 638
BciT130I CCWGG 3 cut(s) 356, 547, 597
BfmI CTRYAG 1 cut(s) 86
BglII AGATCT 1 cut(s) 498
BisI GCNGC 3 cut(s) 282, 437, 492
BlsI GCNGC 3 cut(s) 283, 438, 493
Bme1390I CCNGG 3 cut(s) 356, 547, 597
BmiI GGNNCC 5 cut(s) 285, 429, 435, 457, 544
BmrFI CCNGG 3 cut(s) 356, 547, 597
BmsI GCATC 4 cut(s) 185, 228, 539, 604
BpiI GAAGAC 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 579
Bpu10I CCTNAGC 1 cut(s) 67
BsaHI GRCGYC 1 cut(s) 352
BsaJI CCNNGG 2 cut(s) 423, 596
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 624
Bse21I CCTNAGG 1 cut(s) 125
BseBI CCWGG 3 cut(s) 356, 547, 597
BseDI CCNNGG 2 cut(s) 423, 596
BseGI GGATG 3 cut(s) 157, 243, 633
BseLI CCNNNNNNNGG 1 cut(s) 624
BseMII CTCAG 2 cut(s) 81, 501
BseXI GCAGC 1 cut(s) 478
BshFI GGCC 2 cut(s) 38, 72
BsiHKAI GWGCWC 2 cut(s) 331, 570
BsiSI CCGG 1 cut(s) 431
BslI CCNNNNNNNGG 1 cut(s) 624
BsnI GGCC 2 cut(s) 38, 72
Bsp1286I GDGCHC 2 cut(s) 331, 570
Bsp143I GATC 3 cut(s) 265, 498, 542
BspACI CCGC 3 cut(s) 105, 281, 437
BspANI GGCC 2 cut(s) 38, 72
BspCNI CTCAG 2 cut(s) 80, 500
BspLI GGNNCC 5 cut(s) 285, 429, 435, 457, 544
BspPI GGATC 2 cut(s) 537, 550
BssECI CCNNGG 2 cut(s) 423, 596
BssMI GATC 3 cut(s) 265, 498, 542
BssNI GRCGYC 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 423
Bst2UI CCWGG 3 cut(s) 356, 547, 597
Bst4CI ACNGT 3 cut(s) 347, 363, 465
Bst6I CTCTTC 2 cut(s) 171, 595
BstACI GRCGYC 1 cut(s) 352
BstDEI CTNAG 3 cut(s) 67, 125, 487
BstF5I GGATG 3 cut(s) 157, 243, 633
BstKTI GATC 3 cut(s) 268, 501, 545
BstMBI GATC 3 cut(s) 265, 498, 542
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNI CCWGG 3 cut(s) 356, 547, 597
BstNSI RCATGY 3 cut(s) 122, 176, 560
BstSCI CCNGG 3 cut(s) 354, 545, 595
BstSFI CTRYAG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 2 cut(s) 498, 542
BstYI RGATCY 2 cut(s) 498, 542
Bsu36I CCTNAGG 1 cut(s) 125
BsuRI GGCC 2 cut(s) 38, 72
BtsCI GGATG 3 cut(s) 157, 243, 633
BtsIMutI CAGTG 2 cut(s) 291, 359
CaiI CAGNNNCTG 2 cut(s) 361, 389
CseI GACGC 1 cut(s) 360
CviAII CATG 3 cut(s) 119, 173, 557
DdeI CTNAG 3 cut(s) 67, 125, 487
DpnI GATC 3 cut(s) 267, 500, 544
DpnII GATC 3 cut(s) 265, 498, 542
Eam1104I CTCTTC 2 cut(s) 171, 595
EarI CTCTTC 2 cut(s) 171, 595
Ecl136II GAGCTC 1 cut(s) 568
Eco130I CCWWGG 1 cut(s) 423
Eco147I AGGCCT 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 570
Eco53kI GAGCTC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 315
Eco81I CCTNAGG 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 568
EcoRII CCWGG 3 cut(s) 354, 545, 595
EcoT14I CCWWGG 1 cut(s) 423
EcoT22I ATGCAT 2 cut(s) 178, 243
EcoT38I GRGCYC 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 3 cut(s) 122, 176, 560
FatI CATG 3 cut(s) 118, 172, 556
Fnu4HI GCNGC 3 cut(s) 282, 437, 492
FokI GGATG 3 cut(s) 164, 250, 640
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 3 cut(s) 282, 437, 492
GluI GCNGC 3 cut(s) 282, 437, 492
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 2 cut(s) 38, 72
HapII CCGG 1 cut(s) 431
HgaI GACGC 1 cut(s) 360
Hin1I GRCGYC 1 cut(s) 352
Hin1II CATG 3 cut(s) 122, 176, 560
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 2 cut(s) 198, 521
HpaI GTTAAC 1 cut(s) 256
HpaII CCGG 1 cut(s) 431
HphI GGTGA 2 cut(s) 146, 453
Hpy166II GTNNAC 3 cut(s) 145, 256, 350
Hpy188I TCNGA 2 cut(s) 343, 520
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 3 cut(s) 145, 256, 350
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 3 cut(s) 347, 363, 465
HpyCH4V TGCA 4 cut(s) 176, 241, 335, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 3 cut(s) 67, 125, 487
Hsp92I GRCGYC 1 cut(s) 352
Hsp92II CATG 3 cut(s) 122, 176, 560
KspAI GTTAAC 1 cut(s) 256
Kzo9I GATC 3 cut(s) 265, 498, 542
LmnI GCTCC 5 cut(s) 289, 433, 455, 565, 573
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 4 cut(s) 185, 228, 539, 604
MaeIII GTNAC 1 cut(s) 559
MalI GATC 3 cut(s) 267, 500, 544
MboI GATC 3 cut(s) 265, 498, 542
MboII GAAGA 5 cut(s) 152, 158, 308, 525, 582
MflI RGATCY 2 cut(s) 498, 542
MhlI GDGCHC 2 cut(s) 331, 570
MluCI AATT 4 cut(s) 18, 75, 299, 396
MmeI TCCRAC 2 cut(s) 202, 612
MnlI CCTC 7 cut(s) 28, 174, 211, 240, 379, 469, 598
Mph1103I ATGCAT 2 cut(s) 178, 243
MseI TTAA 3 cut(s) 255, 393, 467
MslI CAYNNNNRTG 1 cut(s) 626
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 3 cut(s) 356, 547, 597
MvaI CCWGG 3 cut(s) 356, 547, 597
MwoI GCNNNNNNNGC 1 cut(s) 365
NdeII GATC 3 cut(s) 265, 498, 542
NlaIII CATG 3 cut(s) 122, 176, 560
NlaIV GGNNCC 5 cut(s) 285, 429, 435, 457, 544
NmeAIII GCCGAG 1 cut(s) 520
NsiI ATGCAT 2 cut(s) 178, 243
NspI RCATGY 3 cut(s) 122, 176, 560
PceI AGGCCT 1 cut(s) 72
PciI ACATGT 1 cut(s) 556
PfeI GAWTC 2 cut(s) 198, 521
PfoI TCCNGGA 1 cut(s) 545
PkrI GCNGC 3 cut(s) 283, 438, 493
PscI ACATGT 1 cut(s) 556
Psp124BI GAGCTC 1 cut(s) 570
Psp6I CCWGG 3 cut(s) 354, 545, 595
PspGI CCWGG 3 cut(s) 354, 545, 595
PspN4I GGNNCC 5 cut(s) 285, 429, 435, 457, 544
PstNI CAGNNNCTG 2 cut(s) 361, 389
PsuI RGATCY 2 cut(s) 498, 542
PvuII CAGCTG 1 cut(s) 491
RseI CAYNNNNRTG 1 cut(s) 626
SacI GAGCTC 1 cut(s) 570
SaqAI TTAA 3 cut(s) 255, 393, 467
SatI GCNGC 3 cut(s) 282, 437, 492
Sau3AI GATC 3 cut(s) 265, 498, 542
ScrFI CCNGG 3 cut(s) 356, 547, 597
SduI GDGCHC 2 cut(s) 331, 570
SetI ASST 4 cut(s) 222, 341, 493, 570
SfaNI GCATC 4 cut(s) 185, 228, 539, 604
SfcI CTRYAG 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 626
Sse9I AATT 4 cut(s) 18, 75, 299, 396
SseBI AGGCCT 1 cut(s) 72
SsiI CCGC 3 cut(s) 105, 281, 437
SstI GAGCTC 1 cut(s) 570
StuI AGGCCT 1 cut(s) 72
StyD4I CCNGG 3 cut(s) 354, 545, 595
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 3 cut(s) 347, 363, 465
TaqI TCGA 1 cut(s) 169
TasI AATT 4 cut(s) 18, 75, 299, 396
TauI GCSGC 2 cut(s) 284, 439
TfiI GAWTC 2 cut(s) 198, 521
Tru1I TTAA 3 cut(s) 255, 393, 467
Tru9I TTAA 3 cut(s) 255, 393, 467
TscAI CASTG 2 cut(s) 298, 366
TseI GCWGC 1 cut(s) 491
TspGWI ACGGA 2 cut(s) 578, 640
TspRI CASTG 2 cut(s) 298, 366
XapI RAATTY 2 cut(s) 299, 396
XceI RCATGY 3 cut(s) 122, 176, 560
XcmI CCANNNNNNNNNTGG 1 cut(s) 628
Zsp2I ATGCAT 2 cut(s) 178, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.