Rh3BG234600

Protein virilizer homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0030001
Physical Location & Seq
Reverse (-)
21971709 .. 21986974
15266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG234600.1

Sequence Viewer

Length: 1356 bp
ATGTTAGTGACGCTAGATCATGGTTGGAGTGAACATCCTTCCGCCATGGCTCATGTGGCTGAAGGCTCCCTGCTTGACGTGGGACTTTTCAAGTGTTGGACATCACCAACTTCCACAGGATACAAATGTCATGCTGGGATTGAGTGTGGCTCTTCTTTTGTGCTCTGGAGAGTGAGCTGCTTTCACTTTGTAAGTGGTGGGGGAATGGAGCAGCTTGTACATGTCTTCAGTCGTGATAAGCAGAATACTACCGCAACAACATTACTTCTACTTGGAGTTGTTGAGAAGGCTACTCAGCATTCTTTTGGATGTGAAGGATTTTTAGCTTGGTGGCCTCGTGAAGATGAAAATATTCCATCTGGTGTCAGTGATGGTTACAGTAGATTGTTGAATTTGTTGTTGCAAAAACAGCGTCATGACGTTGCTTCATGTGCAACTTATGTCCTTCATCGCTTAAGATTTTATGAGGTTACTTCAAGATTTGAGTGTGCAGCTTTGTCTGTATTGGGAGGTCTCTCTACTGTTGGTAGGGTCACAAGTGATACTTTGGACATGCTTATCTGTGCAAAATCGCAACTTAAAAAGCTCTTGAAATTGATAACTTCACGTGGTCCAATTGAAGATCCTTCCCCCGTTGCTCGTGCAACCAGAAAATTGATTCTTGGTCAAACTGAAGAAGTAGGACGTGCTATGGACTTATTTGTGGAAATTACATCATCTATTGAGGCCATTATTCTTTCCCTTCTGTTTTGTCGCTCAGGCCTAATTTTCCTGCTACAGCACCCTGAACTTTCCGCAACTATAATACATGCCCTAAGGGGTGGTGATAATGTGAACAAGGATGTGTGTCTTCCTCTTCGACATGCATCTGTTTCCATATCCAAAGGATTCTTTTCCATTCCACAGGAGGTTGGAATGATTGTTGGGATGCATTTGAGGGTGGTTAACGCCATAGATCGTTTGCTTACTGCGGCTCCAAACACTGAAGAATTTTTATGGGTGTTGTGGGAACTATGTGCTCTTGCAAGGTCTGACTGTGGACGCCAGGCACTGTTGGCTTTGGGATATTTTCCAGAGGCTGTTAAAATTTTGATTGAAGCATTACATTCTGCCAAGGAACCGGAGCCGCTTACTAAAAATAGTGGAGCCTCACCGTTAAATCTTGCGATATTTCACTCAGCTGCCGAGATCTTTGAAGTTATTGTTTCTGATTCAACTGCATCTTCTCTTGGATCCTGGATTGGACATGTTACGGAGCTCCATAGGGCTTTCCATTCCTCTTCTCCAGGGTCAAATAGGAAAGATGCCCCCACACGGATGTTGGAATGGATAGATGGCTGGAGTAGTATATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VIR_N

Protein Analysis

451

Amino Acids

49.36

Weight (kDa)

6.31

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030001)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0476171
rosa_samantha Rh3BG234600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 42, 252, 795, 971, 1127
AclWI GGATC 3 cut(s) 617, 1227, 1240
AcsI RAATTY 3 cut(s) 391, 989, 1086
AcuI CTGAAG 4 cut(s) 81, 211, 693, 1005
AcvI CACGTG 1 cut(s) 608
AcyI GRCGYC 1 cut(s) 1042
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 1314
AflII CTTAAG 1 cut(s) 454
AflIII ACRYGT 2 cut(s) 220, 1246
AgsI TTSAA 8 cut(s) 91, 391, 477, 592, 620, 1097, 1196, 1215
AjiI CACGTC 2 cut(s) 79, 686
AjnI CCWGG 3 cut(s) 1044, 1235, 1285
AluBI AGCT 7 cut(s) 177, 214, 326, 494, 586, 1181, 1258
AluI AGCT 7 cut(s) 177, 214, 326, 494, 586, 1181, 1258
Alw21I GWGCWC 3 cut(s) 165, 1021, 1260
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 3 cut(s) 617, 1227, 1240
AlwNI CAGNNNCTG 2 cut(s) 1051, 1079
AoxI GGCC 3 cut(s) 332, 726, 760
ApeKI GCWGC 4 cut(s) 177, 211, 491, 1181
ApoI RAATTY 3 cut(s) 391, 989, 1086
ArsI GACNNNNNNTTYG 2 cut(s) 397, 429
Asp700I GAANNNNTTC 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 611
AsuHPI GGTGA 3 cut(s) 96, 836, 1143
AvaII GGWCC 1 cut(s) 611
AxyI CCTNAGG 1 cut(s) 815
BaeI ACNNNNGTAYC 2 cut(s) 112, 145
BamHI GGATCC 1 cut(s) 1232
BanII GRGCYC 1 cut(s) 1260
BauI CACGAG 2 cut(s) 336, 639
BbrPI CACGTG 1 cut(s) 608
BbsI GAAGAC 2 cut(s) 217, 842
Bbv12I GWGCWC 3 cut(s) 165, 1021, 1260
BbvI GCAGC 4 cut(s) 164, 223, 503, 1168
BccI CCATC 3 cut(s) 364, 365, 1328
BciT130I CCWGG 3 cut(s) 1046, 1237, 1287
BciVI GTATCC 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 1 cut(s) 14
BfmI CTRYAG 1 cut(s) 776
BfrI CTTAAG 1 cut(s) 454
BfuI GTATCC 1 cut(s) 113
BglII AGATCT 1 cut(s) 1188
BisI GCNGC 6 cut(s) 178, 212, 492, 972, 1127, 1182
BlsI GCNGC 6 cut(s) 179, 213, 493, 973, 1128, 1183
Bme1390I CCNGG 3 cut(s) 1046, 1237, 1287
Bme18I GGWCC 1 cut(s) 611
BmgBI CACGTC 2 cut(s) 79, 686
BmgT120I GGNCC 1 cut(s) 611
BmiI GGNNCC 6 cut(s) 67, 975, 1119, 1125, 1147, 1234
BmrFI CCNGG 3 cut(s) 1046, 1237, 1287
BmsI GCATC 4 cut(s) 875, 918, 1229, 1294
BpiI GAAGAC 2 cut(s) 217, 842
BplI GAGNNNNNCTC 2 cut(s) 134, 166
BpmI CTGGAG 2 cut(s) 187, 1269
Bpu10I CCTNAGC 1 cut(s) 757
BsaAI YACGTR 1 cut(s) 608
BsaHI GRCGYC 1 cut(s) 1042
BsaI GGTCTC 1 cut(s) 518
BsaJI CCNNGG 3 cut(s) 45, 1113, 1286
BsaWI WCCGGW 1 cut(s) 1120
BsaXI ACNNNNNCTCC 2 cut(s) 958, 988
Bsc4I CCNNNNNNNGG 1 cut(s) 1314
Bse21I CCTNAGG 1 cut(s) 815
BseBI CCWGG 3 cut(s) 1046, 1237, 1287
BseDI CCNNGG 3 cut(s) 45, 1113, 1286
BseGI GGATG 5 cut(s) 34, 314, 847, 933, 1323
BseLI CCNNNNNNNGG 1 cut(s) 1314
BseMII CTCAG 3 cut(s) 308, 771, 1191
BseXI GCAGC 4 cut(s) 164, 223, 503, 1168
BseYI CCCAGC 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 510
BshFI GGCC 3 cut(s) 334, 728, 762
BsiHKAI GWGCWC 3 cut(s) 165, 1021, 1260
BsiSI CCGG 1 cut(s) 1121
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 1314
BsmAI GTCTC 1 cut(s) 518
BsmFI GGGAC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 3 cut(s) 334, 728, 762
Bso31I GGTCTC 1 cut(s) 518
Bsp1286I GDGCHC 3 cut(s) 165, 1021, 1260
Bsp1407I TGTACA 1 cut(s) 217
Bsp143I GATC 5 cut(s) 16, 622, 955, 1188, 1232
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 5 cut(s) 42, 252, 795, 971, 1127
BspANI GGCC 3 cut(s) 334, 728, 762
BspCNI CTCAG 3 cut(s) 307, 770, 1190
BspHI TCATGA 1 cut(s) 415
BspLI GGNNCC 6 cut(s) 67, 975, 1119, 1125, 1147, 1234
BspPI GGATC 3 cut(s) 617, 1227, 1240
BspQI GCTCTTC 1 cut(s) 157
BspTI CTTAAG 1 cut(s) 454
BspTNI GGTCTC 1 cut(s) 518
BsrGI TGTACA 1 cut(s) 217
BssECI CCNNGG 3 cut(s) 45, 1113, 1286
BssMI GATC 5 cut(s) 16, 622, 955, 1188, 1232
BssNI GRCGYC 1 cut(s) 1042
BssSI CACGAG 2 cut(s) 336, 639
BssT1I CCWWGG 2 cut(s) 45, 1113
Bst2BI CACGAG 2 cut(s) 336, 639
Bst2UI CCWGG 3 cut(s) 1046, 1237, 1287
Bst4CI ACNGT 5 cut(s) 380, 523, 1037, 1053, 1155
Bst6I CTCTTC 3 cut(s) 157, 861, 1285
BstACI GRCGYC 1 cut(s) 1042
BstAFI CTTAAG 1 cut(s) 454
BstAUI TGTACA 1 cut(s) 217
BstBAI YACGTR 1 cut(s) 608
BstDEI CTNAG 4 cut(s) 294, 757, 815, 1177
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 5 cut(s) 34, 314, 847, 933, 1323
BstKTI GATC 5 cut(s) 19, 625, 958, 1191, 1235
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 5 cut(s) 16, 622, 955, 1188, 1232
BstMWI GCNNNNNNNGC 4 cut(s) 56, 409, 431, 1055
BstNI CCWGG 3 cut(s) 1046, 1237, 1287
BstNSI RCATGY 5 cut(s) 224, 556, 812, 866, 1250
BstSCI CCNGG 3 cut(s) 1044, 1235, 1285
BstSFI CTRYAG 1 cut(s) 776
BstV1I GCAGC 4 cut(s) 164, 223, 503, 1168
BstV2I GAAGAC 2 cut(s) 217, 842
BstX2I RGATCY 3 cut(s) 622, 1188, 1232
BstYI RGATCY 3 cut(s) 622, 1188, 1232
Bsu36I CCTNAGG 1 cut(s) 815
BsuI GTATCC 1 cut(s) 113
BsuRI GGCC 3 cut(s) 334, 728, 762
BtgI CCRYGG 1 cut(s) 45
BtgZI GCGATG 1 cut(s) 434
BtrI CACGTC 2 cut(s) 79, 686
BtsCI GGATG 5 cut(s) 34, 314, 847, 933, 1323
BtsIMutI CAGTG 3 cut(s) 373, 981, 1049
CaiI CAGNNNCTG 2 cut(s) 1051, 1079
CciI TCATGA 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 611
CseI GACGC 3 cut(s) 19, 401, 1050
Csp6I GTAC 1 cut(s) 218
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 4 cut(s) 294, 757, 815, 1177
DpnI GATC 5 cut(s) 18, 624, 957, 1190, 1234
DpnII GATC 5 cut(s) 16, 622, 955, 1188, 1232
Eam1104I CTCTTC 3 cut(s) 157, 861, 1285
EarI CTCTTC 3 cut(s) 157, 861, 1285
EciI GGCGGA 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 1258
Eco130I CCWWGG 2 cut(s) 45, 1113
Eco147I AGGCCT 1 cut(s) 762
Eco24I GRGCYC 1 cut(s) 1260
Eco31I GGTCTC 1 cut(s) 518
Eco47I GGWCC 1 cut(s) 611
Eco53kI GAGCTC 1 cut(s) 1258
Eco57I CTGAAG 4 cut(s) 81, 211, 693, 1005
Eco72I CACGTG 1 cut(s) 608
Eco81I CCTNAGG 1 cut(s) 815
EcoICRI GAGCTC 1 cut(s) 1258
EcoRII CCWGG 3 cut(s) 1044, 1235, 1285
EcoT14I CCWWGG 2 cut(s) 45, 1113
EcoT22I ATGCAT 2 cut(s) 868, 933
EcoT38I GRGCYC 1 cut(s) 1260
ErhI CCWWGG 2 cut(s) 45, 1113
FalI AAGNNNNNCTT 2 cut(s) 529, 561
FaqI GGGAC 1 cut(s) 96
Fnu4HI GCNGC 6 cut(s) 178, 212, 492, 972, 1127, 1182
FokI GGATG 5 cut(s) 21, 321, 854, 940, 1330
FriOI GRGCYC 1 cut(s) 1260
Fsp4HI GCNGC 6 cut(s) 178, 212, 492, 972, 1127, 1182
FspBI CTAG 1 cut(s) 14
GluI GCNGC 6 cut(s) 178, 212, 492, 972, 1127, 1182
GsaI CCCAGC 1 cut(s) 138
GsuI CTGGAG 2 cut(s) 187, 1269
HaeIII GGCC 3 cut(s) 334, 728, 762
HapII CCGG 1 cut(s) 1121
HgaI GACGC 3 cut(s) 19, 401, 1050
Hin1I GRCGYC 1 cut(s) 1042
HincII GTYRAC 1 cut(s) 946
HindII GTYRAC 1 cut(s) 946
HinfI GANTC 3 cut(s) 658, 888, 1211
HpaI GTTAAC 1 cut(s) 946
HpaII CCGG 1 cut(s) 1121
HphI GGTGA 3 cut(s) 96, 836, 1143
Hpy166II GTNNAC 4 cut(s) 32, 835, 946, 1040
Hpy188I TCNGA 2 cut(s) 1033, 1210
Hpy188III TCNNGA 7 cut(s) 166, 233, 338, 416, 477, 589, 1073
Hpy8I GTNNAC 4 cut(s) 32, 835, 946, 1040
HpyAV CCTTC 7 cut(s) 48, 56, 280, 308, 455, 636, 752
HpyCH4III ACNGT 5 cut(s) 380, 523, 1037, 1053, 1155
HpyCH4IV ACGT 4 cut(s) 78, 420, 607, 685
HpyCH4V TGCA 9 cut(s) 403, 434, 491, 566, 644, 866, 931, 1025, 1220
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 409, 431, 1055
HpyF3I CTNAG 4 cut(s) 294, 757, 815, 1177
HpySE526I ACGT 4 cut(s) 78, 420, 607, 685
Hsp92I GRCGYC 1 cut(s) 1042
KspAI GTTAAC 1 cut(s) 946
Kzo9I GATC 5 cut(s) 16, 622, 955, 1188, 1232
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 7 cut(s) 71, 208, 979, 1123, 1145, 1255, 1263
Lsp1109I GCAGC 4 cut(s) 164, 223, 503, 1168
LweI GCATC 4 cut(s) 875, 918, 1229, 1294
MaeI CTAG 1 cut(s) 14
MaeII ACGT 4 cut(s) 78, 420, 607, 685
MaeIII GTNAC 5 cut(s) 7, 374, 469, 532, 1249
MalI GATC 5 cut(s) 18, 624, 957, 1190, 1234
MboI GATC 5 cut(s) 16, 622, 955, 1188, 1232
MfeI CAATTG 1 cut(s) 615
MflI RGATCY 3 cut(s) 622, 1188, 1232
MhlI GDGCHC 3 cut(s) 165, 1021, 1260
MluCI AATT 8 cut(s) 391, 593, 615, 653, 708, 765, 989, 1086
MmeI TCCRAC 4 cut(s) 5, 77, 892, 1302
Mph1103I ATGCAT 2 cut(s) 868, 933
MroXI GAANNNNTTC 1 cut(s) 351
MseI TTAA 5 cut(s) 455, 579, 945, 1083, 1157
MslI CAYNNNNRTG 1 cut(s) 1316
MspA1I CMGCKG 1 cut(s) 1181
MspCI CTTAAG 1 cut(s) 454
MspI CCGG 1 cut(s) 1121
MspR9I CCNGG 3 cut(s) 1046, 1237, 1287
MunI CAATTG 1 cut(s) 615
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 3 cut(s) 1046, 1237, 1287
MwoI GCNNNNNNNGC 4 cut(s) 56, 409, 431, 1055
NcoI CCATGG 1 cut(s) 45
NdeII GATC 5 cut(s) 16, 622, 955, 1188, 1232
NlaIV GGNNCC 6 cut(s) 67, 975, 1119, 1125, 1147, 1234
NmeAIII GCCGAG 1 cut(s) 1210
NmuCI GTSAC 2 cut(s) 7, 532
NsiI ATGCAT 2 cut(s) 868, 933
NspI RCATGY 5 cut(s) 224, 556, 812, 866, 1250
PagI TCATGA 1 cut(s) 415
PceI AGGCCT 1 cut(s) 762
PciI ACATGT 2 cut(s) 220, 1246
PciSI GCTCTTC 1 cut(s) 157
PctI GAATGC 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 351
PfeI GAWTC 3 cut(s) 658, 888, 1211
PfoI TCCNGGA 1 cut(s) 1235
PkrI GCNGC 6 cut(s) 179, 213, 493, 973, 1128, 1183
PmaCI CACGTG 1 cut(s) 608
PmlI CACGTG 1 cut(s) 608
Ppu21I YACGTR 1 cut(s) 608
PscI ACATGT 2 cut(s) 220, 1246
Psp124BI GAGCTC 1 cut(s) 1260
Psp6I CCWGG 3 cut(s) 1044, 1235, 1285
PspCI CACGTG 1 cut(s) 608
PspFI CCCAGC 1 cut(s) 134
PspGI CCWGG 3 cut(s) 1044, 1235, 1285
PspN4I GGNNCC 6 cut(s) 67, 975, 1119, 1125, 1147, 1234
PspPI GGNCC 1 cut(s) 611
PstNI CAGNNNCTG 2 cut(s) 1051, 1079
PsuI RGATCY 3 cut(s) 622, 1188, 1232
PvuII CAGCTG 1 cut(s) 1181
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 1316
SacI GAGCTC 1 cut(s) 1260
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 5 cut(s) 455, 579, 945, 1083, 1157
SatI GCNGC 6 cut(s) 178, 212, 492, 972, 1127, 1182
Sau3AI GATC 5 cut(s) 16, 622, 955, 1188, 1232
Sau96I GGNCC 1 cut(s) 611
ScrFI CCNGG 3 cut(s) 1046, 1237, 1287
SduI GDGCHC 3 cut(s) 165, 1021, 1260
SfaNI GCATC 4 cut(s) 875, 918, 1229, 1294
SfcI CTRYAG 1 cut(s) 776
SinI GGWCC 1 cut(s) 611
SmiMI CAYNNNNRTG 1 cut(s) 1316
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
Sse9I AATT 8 cut(s) 391, 593, 615, 653, 708, 765, 989, 1086
SseBI AGGCCT 1 cut(s) 762
SsiI CCGC 5 cut(s) 42, 252, 795, 971, 1127
SspI AATATT 1 cut(s) 352
SspMI CTAG 1 cut(s) 14
SstI GAGCTC 1 cut(s) 1260
StuI AGGCCT 1 cut(s) 762
StyD4I CCNGG 3 cut(s) 1044, 1235, 1285
StyI CCWWGG 2 cut(s) 45, 1113
TaaI ACNGT 5 cut(s) 380, 523, 1037, 1053, 1155
TaiI ACGT 4 cut(s) 81, 423, 610, 688
TaqI TCGA 1 cut(s) 859
TasI AATT 8 cut(s) 391, 593, 615, 653, 708, 765, 989, 1086
TatI WGTACW 1 cut(s) 217
TauI GCSGC 2 cut(s) 974, 1129
TfiI GAWTC 3 cut(s) 658, 888, 1211
Tru1I TTAA 5 cut(s) 455, 579, 945, 1083, 1157
Tru9I TTAA 5 cut(s) 455, 579, 945, 1083, 1157
TscAI CASTG 3 cut(s) 373, 988, 1056
TseFI GTSAC 2 cut(s) 7, 532
TseI GCWGC 4 cut(s) 177, 211, 491, 1181
Tsp45I GTSAC 2 cut(s) 7, 532
TspDTI ATGAA 3 cut(s) 360, 417, 437
TspGWI ACGGA 2 cut(s) 1268, 1330
TspRI CASTG 3 cut(s) 373, 988, 1056
Vha464I CTTAAG 1 cut(s) 454
VpaK11BI GGWCC 1 cut(s) 611
XapI RAATTY 3 cut(s) 391, 989, 1086
XceI RCATGY 5 cut(s) 224, 556, 812, 866, 1250
XcmI CCANNNNNNNNNTGG 2 cut(s) 52, 1318
XmnI GAANNNNTTC 1 cut(s) 351
XspI CTAG 1 cut(s) 14
Zsp2I ATGCAT 2 cut(s) 868, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.