Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024927

Physical Location & Seq

Genomic Coordinates Forward (+)

23478132 .. 23479328

Gene Structure 1197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTCAATGGCCATGGACTCTCTGTTGCTTCCTGCATATTTTTGTTAGTGCCAGTGGAAATTGGGTCATGTTGGATAGGTAGTGTGTCTGCTCTCACATCCTTGGCTTCCATCTGCAATTTATTGTCTATTATGGTGAATGAACACATACAGCAAGCAGCAGAGGGTGAGTTTTCTTTTAGGGATAGGACGGCGATCACATCAAATATAGGAGGGGTTGCCATTTGCAGGAGGCATGGCAGTGTTTTGTTTTGGGGGTTGGGGATGACATTGGCTTTGGAAGCCTCTATGGAAGATAGAACCCAGTTCCCAAGTTTTCTTGCTCAGGCTTTCACAGGAATAGGCATCATGTACGCTTCGCTTGGATTCTTTGGATACATGGCTTACGGTGATCAAACGAGAGACATTATCACTCTCAATCTCCCTCAAACTTGGTCATCCAAAGGCCTTCAGGAATGGGAAAATTGCGAGTATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031984 GO:0034220 GO:0042175 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:0098827 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

159

Amino Acids

17.38

Weight (kDa)

4.84

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	5 - 146	1.2e-13	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0024927)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0477581
rosa_multiflora	Rmu_sc0029718.1_g000003
rosa_samantha	Rh3BG245900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	473
AcoI	YGGCCR	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	7
Alw26I	GTCTC	1 cut(s)	396
AoxI	GGCC	2 cut(s)	10, 445
ApeKI	GCWGC	1 cut(s)	158
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
AsuHPI	GGTGA	3 cut(s)	148, 179, 401
BalI	TGGCCA	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	207
BciVI	GTATCC	1 cut(s)	368
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	396
BfuI	GTATCC	1 cut(s)	368
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
BmrI	ACTGGG	1 cut(s)	298
BmsI	GCATC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	298
Bpu10I	CCTNAGC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	13, 102
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	53, 304
BseDI	CCNNGG	2 cut(s)	13, 102
BseGI	GGATG	3 cut(s)	98, 270, 437
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	2 cut(s)	53, 304
BseXI	GCAGC	1 cut(s)	170
BshFI	GGCC	2 cut(s)	12, 447
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	396
BsnI	GGCC	2 cut(s)	12, 447
Bsp143I	GATC	2 cut(s)	195, 391
Bsp19I	CCATGG	1 cut(s)	13
BspANI	GGCC	2 cut(s)	12, 447
BspCNI	CTCAG	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	53, 304
BssECI	CCNNGG	2 cut(s)	13, 102
BssMI	GATC	2 cut(s)	195, 391
BssNAI	GTATAC	1 cut(s)	474
BssT1I	CCWWGG	2 cut(s)	13, 102
Bst1107I	GTATAC	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	13
BstF5I	GGATG	3 cut(s)	98, 270, 437
BstKTI	GATC	2 cut(s)	198, 394
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	2 cut(s)	195, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	170
BstZ17I	GTATAC	1 cut(s)	474
BsuI	GTATCC	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	12, 447
BtgI	CCRYGG	1 cut(s)	13
BtsCI	GGATG	3 cut(s)	98, 270, 437
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	60, 247
Cac8I	GCNNGC	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	6 cut(s)	14, 69, 236, 349, 379, 477
CviJI	RGCY	7 cut(s)	12, 107, 275, 284, 329, 383, 447
CviKI_1	RGCY	7 cut(s)	12, 107, 275, 284, 329, 383, 447
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	2 cut(s)	197, 393
DpnII	GATC	2 cut(s)	195, 391
EaeI	YGGCCR	1 cut(s)	10
Eco130I	CCWWGG	2 cut(s)	13, 102
Eco147I	AGGCCT	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	434
EcoT14I	CCWWGG	2 cut(s)	13, 102
ErhI	CCWWGG	2 cut(s)	13, 102
FaeI	CATG	6 cut(s)	17, 72, 239, 352, 382, 480
FatI	CATG	6 cut(s)	13, 68, 235, 348, 378, 476
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	473
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	3 cut(s)	85, 277, 424
Fsp4HI	GCNGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	12, 447
Hin1II	CATG	6 cut(s)	17, 72, 239, 352, 382, 480
HinfI	GANTC	2 cut(s)	18, 366
HphI	GGTGA	3 cut(s)	148, 179, 401
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188III	TCNNGA	1 cut(s)	452
Hpy8I	GTNNAC	1 cut(s)	474
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	3 cut(s)	36, 117, 228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	324
Hsp92II	CATG	6 cut(s)	17, 72, 239, 352, 382, 480
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	2 cut(s)	195, 391
LpnPI	CCDG	7 cut(s)	46, 66, 214, 311, 317, 321, 437
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	1 cut(s)	354
MalI	GATC	2 cut(s)	197, 393
MboI	GATC	2 cut(s)	195, 391
MboII	GAAGA	1 cut(s)	305
MlsI	TGGCCA	1 cut(s)	12
MluCI	AATT	3 cut(s)	60, 118, 463
MluNI	TGGCCA	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	12
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	5 cut(s)	157, 206, 225, 295, 435
Mox20I	TGGCCA	1 cut(s)	12
MscI	TGGCCA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	281
NcoI	CCATGG	1 cut(s)	13
NdeII	GATC	2 cut(s)	195, 391
NlaIII	CATG	6 cut(s)	17, 72, 239, 352, 382, 480
PceI	AGGCCT	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	366
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	240
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	195, 391
SchI	GAGTC	1 cut(s)	12
SetI	ASST	1 cut(s)	82
SfaNI	GCATC	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	3 cut(s)	60, 118, 463
SseBI	AGGCCT	1 cut(s)	447
StuI	AGGCCT	1 cut(s)	447
StyI	CCWWGG	2 cut(s)	13, 102
TaaI	ACNGT	1 cut(s)	389
TasI	AATT	3 cut(s)	60, 118, 463
TfiI	GAWTC	1 cut(s)	366
TscAI	CASTG	2 cut(s)	60, 247
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	60, 247
XmiI	GTMKAC	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.