Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0024927

Physical Location & Seq

Genomic Coordinates Forward (+)

23314183 .. 23317681

Gene Structure 3499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG245900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAATGGTGCAGACCTCTACATAGAAGAATGTCAAAAGTGGTTCAGGATTACTGAAATCAATGTTGTTGGGACCGGCATATTTGGCCTTCCATATGCTTTCCGAATTGCTGGTTGGCTCACCGACTCGCTTGGCGTCATTGTCACTGGTCTTACAACATACTACTGCATGCTCCTCTTTGTGCATTCCTGCATTTTAGGGAGAAATTGGAATCGGAAGAAGATTCAATGGTTACAAAATCTTATGCAAGCAGCAGAGGGTGAGTTTTCTTTTAGGGATAGGACGGCGATCACATCAAATATAGGAGGGGTTGCCATTTGCAGGAGGCATGGCAGTGTTTTGTTTTGGGGGTTGGGGATGACATTGGCTTTGGAAGCCTCTATGGAAGATAGAACCCAGTTCCCAAGTTTTCTTGCTCAGGCTTTCACAGGAATAGGCATCATGTACGCTTCGCTTGGATTCTTTGGATACATGGCTTACGGTGATCAAACGAGAGACATTATCACTCTCAATCTCCCTCAAACTTGGTCATCCAAAGGCCTTCAGGAATGGGAAAATTGCGAGTATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031984 GO:0034220 GO:0042175 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:0098827 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

190

Amino Acids

21.51

Weight (kDa)

5.67

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	21 - 62	3.2e-08	Transmembrane amino acid transporter protein
Aa_trans	PF01490	115 - 177	8.4e-11	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0024927)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0477581
rosa_multiflora	Rmu_sc0029718.1_g000003
rosa_samantha	Rh3BG245900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	566
AcuI	CTGAAG	1 cut(s)	527
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
Alw26I	GTCTC	1 cut(s)	489
AoxI	GGCC	2 cut(s)	85, 538
ApeKI	GCWGC	1 cut(s)	251
ArsI	GACNNNNNNTTYG	2 cut(s)	352, 384
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	3 cut(s)	112, 272, 494
AvaII	GGWCC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	263
BceAI	ACGGC	1 cut(s)	300
BciVI	GTATCC	1 cut(s)	461
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	1 cut(s)	489
BfuI	GTATCC	1 cut(s)	461
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	73
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	1 cut(s)	447
BmuI	ACTGGG	1 cut(s)	391
Bpu10I	CCTNAGC	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	151, 397
BseGI	GGATG	2 cut(s)	363, 530
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	2 cut(s)	151, 397
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	263
BsgI	GTGCAG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	87, 540
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	87, 540
Bsp143I	GATC	2 cut(s)	288, 484
BspANI	GGCC	2 cut(s)	87, 540
BspCNI	CTCAG	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	151, 397
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	2 cut(s)	288, 484
BssNAI	GTATAC	1 cut(s)	567
BssNI	GRCGYC	1 cut(s)	135
Bst1107I	GTATAC	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	482
BstACI	GRCGYC	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	170, 249
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	363, 530
BstKTI	GATC	2 cut(s)	291, 487
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	2 cut(s)	288, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 374
BstNSI	RCATGY	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	263
BstZ17I	GTATAC	1 cut(s)	567
BsuI	GTATCC	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	87, 540
BtsCI	GGATG	2 cut(s)	363, 530
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	144, 340
Cac8I	GCNNGC	2 cut(s)	170, 249
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	72
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	5 cut(s)	169, 329, 442, 472, 570
CviJI	RGCY	7 cut(s)	87, 118, 368, 377, 422, 476, 540
CviKI_1	RGCY	7 cut(s)	87, 118, 368, 377, 422, 476, 540
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	2 cut(s)	290, 486
DpnII	GATC	2 cut(s)	288, 484
Eco147I	AGGCCT	1 cut(s)	540
Eco47I	GGWCC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	527
FaeI	CATG	5 cut(s)	172, 332, 445, 475, 573
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	5 cut(s)	168, 328, 441, 471, 569
FauNDI	CATATG	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	566
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	2 cut(s)	370, 517
Fsp4HI	GCNGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	252
HaeIII	GGCC	2 cut(s)	87, 540
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	5 cut(s)	172, 332, 445, 475, 573
HinfI	GANTC	4 cut(s)	125, 211, 223, 459
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	3 cut(s)	112, 272, 494
Hpy166II	GTNNAC	1 cut(s)	567
Hpy188I	TCNGA	2 cut(s)	104, 216
Hpy188III	TCNNGA	2 cut(s)	46, 545
Hpy8I	GTNNAC	1 cut(s)	567
HpyAV	CCTTC	2 cut(s)	98, 551
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4V	TGCA	6 cut(s)	11, 168, 184, 192, 247, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 374
HpyF3I	CTNAG	1 cut(s)	417
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	5 cut(s)	172, 332, 445, 475, 573
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	288, 484
LmnI	GCTCC	1 cut(s)	177
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	447
MaeIII	GTNAC	2 cut(s)	142, 231
MalI	GATC	2 cut(s)	290, 486
MboI	GATC	2 cut(s)	288, 484
MboII	GAAGA	4 cut(s)	38, 229, 232, 398
MluCI	AATT	3 cut(s)	105, 205, 556
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	7 cut(s)	26, 185, 250, 299, 318, 388, 528
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	84, 374
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	2 cut(s)	288, 484
NlaIII	CATG	5 cut(s)	172, 332, 445, 475, 573
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	172
PaeI	GCATGC	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	540
PctI	GAATGC	1 cut(s)	184
PfeI	GAWTC	3 cut(s)	211, 223, 459
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	72
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	333
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	2 cut(s)	288, 484
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	1 cut(s)	119
SetI	ASST	1 cut(s)	18
SfaNI	GCATC	1 cut(s)	447
SinI	GGWCC	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	333
SphI	GCATGC	1 cut(s)	172
Sse9I	AATT	3 cut(s)	105, 205, 556
SseBI	AGGCCT	1 cut(s)	540
StuI	AGGCCT	1 cut(s)	540
TaaI	ACNGT	1 cut(s)	482
TasI	AATT	3 cut(s)	105, 205, 556
TfiI	GAWTC	3 cut(s)	211, 223, 459
TscAI	CASTG	2 cut(s)	151, 340
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	151, 340
VpaK11BI	GGWCC	1 cut(s)	72
XceI	RCATGY	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.