Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029718.1

Orthogroup ID

OG0024927

Physical Location & Seq

Genomic Coordinates Reverse (-)

6020 .. 7116

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029718.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atggcgggcggaaaacaaagctcggcgggggttcctctgctagaaaagtctgtgggggatttctgggctaggacgctcggaaacataattgtctcagttgttgggaccggcatatttggccttccgaaaggtcgttatctgactgaatgcttgatattgattgctcaatgcgggggatctgcagtgtatcttgtgtttatcggacaaaatgtttcgtcgatgttcaatggccatggactctctgttgcttcctgcatatttttgttagtgccggtggaaattgggtcatgttggataggtagtgtgtctgctctcacacccttggcttccatctgcaatttattgtctattatggtgaatgaacacatacagcaagcagcagagggtgagttttcttttagggataggacggcgatcacatcaaatataggaggggttgccatttgcaggaggcatggcagtgttttgttttgggggttggggatgacattggctttggaagcctctatggaagatagaacccagttcccaagtttgcttgctcaggctttcacaggaataggcatcgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031984 GO:0034220 GO:0042175 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:0098827 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

190

Amino Acids

19.94

Weight (kDa)

6.26

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024927)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0477581
rosa_multiflora	Rmu_sc0029718.1_g000003
rosa_samantha	Rh3BG245900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 9, 26, 171
AclWI	GGATC	1 cut(s)	184
AcoI	YGGCCR	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	447
AgsI	TTSAA	1 cut(s)	226
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	184
AoxI	GGCC	2 cut(s)	118, 229
ApeKI	GCWGC	1 cut(s)	377
ArsI	GACNNNNNNTTYG	2 cut(s)	478, 510
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	367, 398
AvaII	GGWCC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	41, 69
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	33, 106
BmrI	ACTGGG	1 cut(s)	517
BmuI	ACTGGG	1 cut(s)	517
Bpu10I	CCTNAGC	1 cut(s)	543
BsaJI	CCNNGG	2 cut(s)	232, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	447
Bse118I	RCCGGY	2 cut(s)	107, 271
Bse1I	ACTGG	1 cut(s)	523
BseDI	CCNNGG	2 cut(s)	232, 321
BseGI	GGATG	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	447
BseMII	CTCAG	2 cut(s)	108, 557
BseNI	ACTGG	1 cut(s)	523
BseXI	GCAGC	1 cut(s)	389
BshFI	GGCC	2 cut(s)	120, 231
BsiSI	CCGG	2 cut(s)	108, 272
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	447
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	120, 231
Bsp143I	GATC	2 cut(s)	176, 414
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	4 cut(s)	5, 9, 26, 171
BspANI	GGCC	2 cut(s)	120, 231
BspCNI	CTCAG	2 cut(s)	107, 556
BspLI	GGNNCC	2 cut(s)	33, 106
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	1 cut(s)	184
BsrFI	RCCGGY	2 cut(s)	107, 271
BsrI	ACTGG	1 cut(s)	523
BssAI	RCCGGY	2 cut(s)	107, 271
BssECI	CCNNGG	2 cut(s)	232, 321
BssMI	GATC	2 cut(s)	176, 414
BssT1I	CCWWGG	2 cut(s)	232, 321
BstC8I	GCNNGC	3 cut(s)	7, 375, 540
BstDEI	CTNAG	2 cut(s)	94, 543
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	489
BstKTI	GATC	2 cut(s)	179, 417
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	2 cut(s)	176, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 500
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	389
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	120, 231
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	489
BtsI	GCAGTG	2 cut(s)	189, 466
BtsIMutI	CAGTG	2 cut(s)	189, 466
Cac8I	GCNNGC	3 cut(s)	7, 375, 540
Cfr10I	RCCGGY	2 cut(s)	107, 271
Cfr13I	GGNCC	1 cut(s)	105
CseI	GACGC	1 cut(s)	82
CviAII	CATG	3 cut(s)	233, 288, 455
CviJI	RGCY	8 cut(s)	21, 68, 120, 231, 326, 494, 503, 548
CviKI_1	RGCY	8 cut(s)	21, 68, 120, 231, 326, 494, 503, 548
DdeI	CTNAG	2 cut(s)	94, 543
DpnI	GATC	2 cut(s)	178, 416
DpnII	GATC	2 cut(s)	176, 414
EaeI	YGGCCR	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	232, 321
Eco47I	GGWCC	1 cut(s)	105
EcoT14I	CCWWGG	2 cut(s)	232, 321
ErhI	CCWWGG	2 cut(s)	232, 321
FaeI	CATG	3 cut(s)	236, 291, 458
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	3 cut(s)	232, 287, 454
FauI	CCCGC	2 cut(s)	19, 164
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	2 cut(s)	41, 69
GluI	GCNGC	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	120, 231
HapII	CCGG	2 cut(s)	108, 272
HgaI	GACGC	1 cut(s)	82
Hin1II	CATG	3 cut(s)	236, 291, 458
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	2 cut(s)	108, 272
HphI	GGTGA	2 cut(s)	367, 398
Hpy188I	TCNGA	4 cut(s)	80, 126, 141, 203
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	131
HpyCH4V	TGCA	4 cut(s)	182, 255, 336, 447
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 500
HpyF3I	CTNAG	2 cut(s)	94, 543
Hsp92II	CATG	3 cut(s)	236, 291, 458
Kzo9I	GATC	2 cut(s)	176, 414
LpnPI	CCDG	8 cut(s)	49, 121, 265, 285, 433, 530, 536, 540
Lsp1109I	GCAGC	1 cut(s)	389
MaeI	CTAG	2 cut(s)	41, 69
MalI	GATC	2 cut(s)	178, 416
MboI	GATC	2 cut(s)	176, 414
MboII	GAAGA	1 cut(s)	524
MflI	RGATCY	1 cut(s)	176
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	3 cut(s)	87, 279, 337
MluNI	TGGCCA	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	5 cut(s)	45, 376, 425, 444, 514
Mox20I	TGGCCA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	459
Msp20I	TGGCCA	1 cut(s)	231
MspI	CCGG	2 cut(s)	108, 272
Mva1269I	GAATGC	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	117, 500
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	2 cut(s)	176, 414
NlaIII	CATG	3 cut(s)	236, 291, 458
NlaIV	GGNNCC	2 cut(s)	33, 106
PctI	GAATGC	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	379
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	33, 106
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	459
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	2 cut(s)	176, 414
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	1 cut(s)	231
SetI	ASST	3 cut(s)	23, 133, 301
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	3 cut(s)	87, 279, 337
SsiI	CCGC	4 cut(s)	5, 9, 26, 171
SspMI	CTAG	2 cut(s)	41, 69
StyI	CCWWGG	2 cut(s)	232, 321
TaqI	TCGA	1 cut(s)	218
TasI	AATT	3 cut(s)	87, 279, 337
TscAI	CASTG	2 cut(s)	189, 466
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	189, 466
VpaK11BI	GGWCC	1 cut(s)	105
XspI	CTAG	2 cut(s)	41, 69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.