Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024478

Physical Location & Seq

Genomic Coordinates Reverse (-)

27362920 .. 27363645

Gene Structure 726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGGTATGTTGGGGCTTGTTATCCGAGTAAACTGTCTATTCTTGTTATCGTTCTTGGTGTGTTCTACCCCTCCGGAGGACCCCATCAAGTGTTCATCGTCAAATAACACAAACTGCACCATCACAAACTCCTACGGCATCTTCCCCGATCGAACTGTCTGTAAAGCGACTAGTGTATCATACCCTAGTACGGAGGAAGAACTCGTTAAGGTTGTGGCTGATGCAACCAAGAACAAGAAGAGCATGAAGGTGGCGACTCGTTACTCCCACAGCATTCCCAAGCTGGTTTGCCCGCGCGGCGAAGACGGGCTGATCATAAGCACCAACAACCTCAACCGTGTGGTGAAGGTCGACGTTGAAGGGATGAAGATGACGGTGGAGAGCGGCGTGACGCTTAGGCAGGTGATCAGTGAGGCTGCGAAGGTTGACTTGGCGTTGCCTTACGCACCATATTGGTGGGGGCTAACTGTCGGTGGGTTGCTAGGGACTGGTGCGCATGGAAGCACATTATGGGGTAAGGGAAGCTCTGTTCATGATTATGTGGTGGGACTTAGGATTGTGAGTTCAGGAGGGCCTGAAGTTGGTTATGTCAAGGTGAGAAGTCTCGTTCAAGGTGATAAAGATCTTAATGCAGCTAAGGTTTCACTTGGAGTCTTAGGAGTAATATCACAGGCAAGTACATTTTCTTCTTCATTTATATATTTTGATGTTTTGGGCAGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016899 GO:0019752 GO:0019852 GO:0019853 GO:0030312 GO:0036094 GO:0042364 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044464 GO:0046364 GO:0046394 GO:0048037 GO:0050105 GO:0050660 GO:0050662 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0071944 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALO FAD_binding_4

Protein Analysis

241

Amino Acids

25.69

Weight (kDa)

8.69

Isoelectric Point (pI)

25.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	59 - 191	5.8e-19	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024478)

Species	Orthologous Gene IDs
malus_domestica	MD07G1158000.v1.1
rosa_chinensis	RchiOBHm_Chr3g0481311
rosa_multiflora	Rmu_co8302855.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
Acc16I	TGCGCA	1 cut(s)	495
Acc36I	ACCTGC	1 cut(s)	391
AccBSI	CCGCTC	1 cut(s)	384
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	2 cut(s)	295, 297
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	3 cut(s)	293, 297, 384
AcuI	CTGAAG	1 cut(s)	597
AfaI	GTAC	2 cut(s)	190, 679
AfiI	CCNNNNNNNGG	3 cut(s)	76, 190, 581
AgsI	TTSAA	2 cut(s)	359, 611
AhlI	ACTAGT	1 cut(s)	170
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AloI	GAACNNNNNNTCC	4 cut(s)	513, 545, 547, 579
AluBI	AGCT	3 cut(s)	283, 525, 635
AluI	AGCT	3 cut(s)	283, 525, 635
Alw26I	GTCTC	1 cut(s)	608
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	1 cut(s)	572
ApeKI	GCWGC	2 cut(s)	416, 632
AspLEI	GCGC	2 cut(s)	297, 496
AspS9I	GGNCC	2 cut(s)	79, 572
AsuHPI	GGTGA	4 cut(s)	355, 415, 607, 626
AvaII	GGWCC	1 cut(s)	79
BaeI	ACNNNNGTAYC	2 cut(s)	159, 192
BarI	GAAGNNNNNNTAC	2 cut(s)	670, 702
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	403, 644
BccI	CCATC	2 cut(s)	92, 128
BceAI	ACGGC	1 cut(s)	151
BclI	TGATCA	2 cut(s)	312, 405
BcoDI	GTCTC	1 cut(s)	608
BcuI	ACTAGT	1 cut(s)	170
BfaI	CTAG	3 cut(s)	171, 186, 482
BfuAI	ACCTGC	1 cut(s)	391
BglI	GCCNNNNNGGC	1 cut(s)	297
BglII	AGATCT	1 cut(s)	622
BisI	GCNGC	4 cut(s)	298, 385, 417, 633
BlsI	GCNGC	4 cut(s)	299, 386, 418, 634
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	79, 572
BmiI	GGNNCC	1 cut(s)	81
BmsI	GCATC	2 cut(s)	147, 211
BpiI	GAAGAC	1 cut(s)	309
Bpu10I	CCTNAGC	2 cut(s)	395, 636
BsaBI	GATNNNNATC	1 cut(s)	621
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 190, 581
Bse1I	ACTGG	1 cut(s)	493
Bse8I	GATNNNNATC	1 cut(s)	621
BseAI	TCCGGA	1 cut(s)	73
BseGI	GGATG	1 cut(s)	369
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	3 cut(s)	76, 190, 581
BseNI	ACTGG	1 cut(s)	493
BseXI	GCAGC	2 cut(s)	403, 644
BsgI	GTGCAG	1 cut(s)	100
Bsh1236I	CGCG	2 cut(s)	295, 297
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	574
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	2 cut(s)	499, 561
BslI	CCNNNNNNNGG	3 cut(s)	76, 190, 581
BsmAI	GTCTC	1 cut(s)	608
BsmFI	GGGAC	2 cut(s)	499, 561
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	574
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	4 cut(s)	148, 312, 405, 622
BspACI	CCGC	3 cut(s)	293, 297, 384
BspANI	GGCC	1 cut(s)	574
BspEI	TCCGGA	1 cut(s)	73
BspFNI	CGCG	2 cut(s)	295, 297
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	1 cut(s)	81
BspMI	ACCTGC	1 cut(s)	391
BspQI	GCTCTTC	1 cut(s)	233
BsrBI	CCGCTC	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	493
BssMI	GATC	4 cut(s)	148, 312, 405, 622
Bst4CI	ACNGT	5 cut(s)	35, 157, 338, 376, 469
Bst6I	CTCTTC	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	4 cut(s)	395, 551, 636, 655
BstF5I	GGATG	1 cut(s)	369
BstFNI	CGCG	2 cut(s)	295, 297
BstHHI	GCGC	2 cut(s)	297, 496
BstKTI	GATC	4 cut(s)	151, 315, 408, 625
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	4 cut(s)	148, 312, 405, 622
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstUI	CGCG	2 cut(s)	295, 297
BstV1I	GCAGC	2 cut(s)	403, 644
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	622
BstXI	CCANNNNNNTGG	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	622
BsuRI	GGCC	1 cut(s)	574
BtsCI	GGATG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	415
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	293
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	2 cut(s)	297, 496
Cfr13I	GGNCC	2 cut(s)	79, 572
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	2 cut(s)	189, 678
CviAII	CATG	3 cut(s)	244, 497, 533
CviJI	RGCY	9 cut(s)	16, 218, 283, 310, 416, 463, 525, 574, 635
CviKI_1	RGCY	9 cut(s)	16, 218, 283, 310, 416, 463, 525, 574, 635
CviQI	GTAC	2 cut(s)	189, 678
DdeI	CTNAG	4 cut(s)	395, 551, 636, 655
DpnI	GATC	4 cut(s)	150, 314, 407, 624
DpnII	GATC	4 cut(s)	148, 312, 405, 622
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	597
EcoO109I	RGGNCCY	2 cut(s)	79, 572
FaeI	CATG	3 cut(s)	247, 500, 536
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	2 cut(s)	499, 561
FatI	CATG	3 cut(s)	243, 496, 532
FauI	CCCGC	1 cut(s)	300
FbaI	TGATCA	2 cut(s)	312, 405
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	4 cut(s)	298, 385, 417, 633
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	4 cut(s)	298, 385, 417, 633
FspAI	RTGCGCAY	1 cut(s)	495
FspBI	CTAG	3 cut(s)	171, 186, 482
FspI	TGCGCA	1 cut(s)	495
GlaI	GCGC	2 cut(s)	296, 495
GluI	GCNGC	4 cut(s)	298, 385, 417, 633
HaeIII	GGCC	1 cut(s)	574
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	2 cut(s)	297, 496
Hin1II	CATG	3 cut(s)	247, 500, 536
Hin6I	GCGC	2 cut(s)	295, 494
HinP1I	GCGC	2 cut(s)	295, 494
HincII	GTYRAC	2 cut(s)	352, 427
HindII	GTYRAC	2 cut(s)	352, 427
HinfI	GANTC	2 cut(s)	256, 651
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	4 cut(s)	355, 415, 607, 626
Hpy166II	GTNNAC	3 cut(s)	31, 352, 427
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	3 cut(s)	74, 533, 567
Hpy8I	GTNNAC	3 cut(s)	31, 352, 427
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	4 cut(s)	241, 340, 353, 415
HpyCH4III	ACNGT	5 cut(s)	35, 157, 338, 376, 469
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	3 cut(s)	117, 224, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpyF3I	CTNAG	4 cut(s)	395, 551, 636, 655
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	3 cut(s)	247, 500, 536
HspAI	GCGC	2 cut(s)	295, 494
Kpn2I	TCCGGA	1 cut(s)	73
Ksp22I	TGATCA	2 cut(s)	312, 405
Kzo9I	GATC	4 cut(s)	148, 312, 405, 622
LguI	GCTCTTC	1 cut(s)	233
LpnPI	CCDG	7 cut(s)	87, 269, 386, 474, 552, 588, 656
Lsp1109I	GCAGC	2 cut(s)	403, 644
LweI	GCATC	2 cut(s)	147, 211
MaeI	CTAG	3 cut(s)	171, 186, 482
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	260, 388
MalI	GATC	4 cut(s)	150, 314, 407, 624
MbiI	CCGCTC	1 cut(s)	384
MboI	GATC	4 cut(s)	148, 312, 405, 622
MboII	GAAGA	7 cut(s)	133, 209, 250, 314, 379, 678, 681
MflI	RGATCY	1 cut(s)	622
MlyI	GAGTC	2 cut(s)	250, 660
MnlI	CCTC	6 cut(s)	70, 81, 187, 341, 406, 563
MroI	TCCGGA	1 cut(s)	73
MseI	TTAA	2 cut(s)	207, 627
MslI	CAYNNNNRTG	3 cut(s)	248, 454, 537
MspI	CCGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	273
MvnI	CGCG	2 cut(s)	295, 297
MwoI	GCNNNNNNNGC	1 cut(s)	297
NdeII	GATC	4 cut(s)	148, 312, 405, 622
NlaIII	CATG	3 cut(s)	247, 500, 536
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	388
NsbI	TGCGCA	1 cut(s)	495
PagI	TCATGA	1 cut(s)	532
PaqCI	CACCTGC	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	233
PctI	GAATGC	1 cut(s)	273
PkrI	GCNGC	4 cut(s)	299, 386, 418, 634
Ple19I	CGATCG	1 cut(s)	151
PleI	GAGTC	2 cut(s)	250, 659
PpsI	GAGTC	2 cut(s)	250, 659
PpuMI	RGGWCCY	1 cut(s)	79
Psp5II	RGGWCCY	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	2 cut(s)	79, 572
PspPPI	RGGWCCY	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	622
PvuI	CGATCG	1 cut(s)	151
RsaI	GTAC	2 cut(s)	190, 679
RsaNI	GTAC	2 cut(s)	189, 678
RseI	CAYNNNNRTG	3 cut(s)	248, 454, 537
SalI	GTCGAC	1 cut(s)	350
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	207, 627
SatI	GCNGC	4 cut(s)	298, 385, 417, 633
Sau3AI	GATC	4 cut(s)	148, 312, 405, 622
Sau96I	GGNCC	2 cut(s)	79, 572
SchI	GAGTC	2 cut(s)	250, 660
SfaNI	GCATC	2 cut(s)	147, 211
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	3 cut(s)	248, 454, 537
SpeI	ACTAGT	1 cut(s)	170
SsiI	CCGC	3 cut(s)	293, 297, 384
SspMI	CTAG	3 cut(s)	171, 186, 482
TaaI	ACNGT	5 cut(s)	35, 157, 338, 376, 469
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	2 cut(s)	151, 351
TatI	WGTACW	1 cut(s)	677
TauI	GCSGC	2 cut(s)	300, 387
Tru1I	TTAA	2 cut(s)	207, 627
Tru9I	TTAA	2 cut(s)	207, 627
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	2 cut(s)	416, 632
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	5 cut(s)	84, 260, 380, 521, 681
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	3 cut(s)	171, 186, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.