RchiOBHm_Chr3g0485321

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0029974
Physical Location & Seq
Reverse (-)
31989336 .. 31989843
508 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 468 bp
ATGTACTTGGGTCTAGAAATATTCTTTCCCCTTATCGTGACTTCAGCTCGAACTGTTTTTGGGTTAGAGCTCGAGCCGCAGTCCAACAAGCCTTATCTCTCAACTTCGCTTCAAGACTTTTGGGGCTATCGATGGAATCTAATGGTCACAAATATCCTGCGGCCAACAGTATACGATCTTACTCGGCACGTGTGCGCCCGTTTAGTTGGTGAACGGTGGCCGGGCCACGCTCTCTGCTTTGATGGCCACCTTTGCAGTCTCCGGGTTAATGCACGAGGTTACTTATTACTATCTCACGCGCGTGCAGCCCACATGGGAAGTGACGTGGATGTGAAGAAGGCGGTTACCAGCAGGTGGAGGTTGCACTCGGTGGTTTCGGGGCTGTTGACATTTGTGTTCTTGGCTGTGACAGGCAACTGGCTGTTCTTTCCTCAGTTGCCAGGAATGGTGTTGATACAAGGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

155

Amino Acids

17.58

Weight (kDa)

9.45

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 25 - 66 3.5e-07 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029974)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0485321
rosa_samantha Rh3AG267100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 342
Acc36I ACCTGC 1 cut(s) 342
AccB7I CCANNNNNTGG 1 cut(s) 354
AccI GTMKAC 1 cut(s) 171
AccII CGCG 2 cut(s) 299, 301
AciI CCGC 3 cut(s) 77, 160, 341
AcoI YGGCCR 3 cut(s) 161, 218, 244
AcuI CTGAAG 1 cut(s) 27
AcvI CACGTG 1 cut(s) 190
AdeI CACNNNGTG 1 cut(s) 370
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 354
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 1 cut(s) 113
AjiI CACGTC 1 cut(s) 325
AjnI CCWGG 1 cut(s) 439
AleI CACNNNNGTG 1 cut(s) 300
AluBI AGCT 2 cut(s) 47, 70
AluI AGCT 2 cut(s) 47, 70
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 263
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 4 cut(s) 161, 218, 223, 244
ApeKI GCWGC 1 cut(s) 305
AspLEI GCGC 2 cut(s) 197, 301
AspS9I GGNCC 1 cut(s) 223
AsuC2I CCSGG 2 cut(s) 222, 263
AsuHPI GGTGA 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 71
BalI TGGCCA 1 cut(s) 246
BanII GRGCYC 1 cut(s) 72
BauI CACGAG 1 cut(s) 273
BbrPI CACGTG 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 317
BccI CCATC 2 cut(s) 126, 236
BciT130I CCWGG 1 cut(s) 441
BcnI CCSGG 2 cut(s) 222, 263
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 342
BisI GCNGC 3 cut(s) 77, 161, 306
BlsI GCNGC 3 cut(s) 78, 162, 307
Bme1390I CCNGG 3 cut(s) 222, 263, 441
BmeT110I CYCGRG 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 223
BmrFI CCNGG 3 cut(s) 222, 263, 441
BpuMI CCSGG 2 cut(s) 222, 263
Bsa29I ATCGAT 1 cut(s) 130
BsaAI YACGTR 1 cut(s) 190
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse1I ACTGG 1 cut(s) 422
BseBI CCWGG 1 cut(s) 441
BseCI ATCGAT 1 cut(s) 130
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 1 cut(s) 422
BseXI GCAGC 1 cut(s) 317
BsgI GTGCAG 1 cut(s) 324
Bsh1236I CGCG 2 cut(s) 299, 301
BshFI GGCC 4 cut(s) 163, 220, 225, 246
BshVI ATCGAT 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 2 cut(s) 221, 262
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 263
BsnI GGCC 4 cut(s) 163, 220, 225, 246
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 3 cut(s) 77, 160, 341
BspANI GGCC 4 cut(s) 163, 220, 225, 246
BspCNI CTCAG 1 cut(s) 445
BspDI ATCGAT 1 cut(s) 130
BspFNI CGCG 2 cut(s) 299, 301
BspMI ACCTGC 1 cut(s) 342
BsrI ACTGG 1 cut(s) 422
BssMI GATC 1 cut(s) 175
BssNAI GTATAC 1 cut(s) 172
BssSI CACGAG 1 cut(s) 273
Bst1107I GTATAC 1 cut(s) 172
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 3 cut(s) 55, 169, 216
BstBAI YACGTR 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 432
BstEII GGTNACC 1 cut(s) 343
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 2 cut(s) 299, 301
BstHHI GCGC 2 cut(s) 197, 301
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 4 cut(s) 76, 243, 252, 305
BstNI CCWGG 1 cut(s) 441
BstPI GGTNACC 1 cut(s) 343
BstSCI CCNGG 3 cut(s) 220, 261, 439
BstUI CGCG 2 cut(s) 299, 301
BstV1I GCAGC 1 cut(s) 317
BstZ17I GTATAC 1 cut(s) 172
Bsu15I ATCGAT 1 cut(s) 130
BsuRI GGCC 4 cut(s) 163, 220, 225, 246
BsuTUI ATCGAT 1 cut(s) 130
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 1 cut(s) 334
BveI ACCTGC 1 cut(s) 342
Cac8I GCNNGC 1 cut(s) 303
CfoI GCGC 2 cut(s) 197, 301
Cfr13I GGNCC 1 cut(s) 223
ClaI ATCGAT 1 cut(s) 130
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 313
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 432
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
DraIII CACNNNGTG 1 cut(s) 370
EaeI YGGCCR 3 cut(s) 161, 218, 244
Ecl136II GAGCTC 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 27
Eco72I CACGTG 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 71
Eco91I GGTNACC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 72
FaeI CATG 1 cut(s) 316
FaiI YATR 2 cut(s) 172, 314
FatI CATG 1 cut(s) 312
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 77, 161, 306
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 3 cut(s) 77, 161, 306
FspBI CTAG 1 cut(s) 14
GlaI GCGC 2 cut(s) 196, 300
GluI GCNGC 3 cut(s) 77, 161, 306
HaeIII GGCC 4 cut(s) 163, 220, 225, 246
HapII CCGG 2 cut(s) 221, 262
HhaI GCGC 2 cut(s) 197, 301
Hin1II CATG 1 cut(s) 316
Hin6I GCGC 2 cut(s) 195, 299
HinP1I GCGC 2 cut(s) 195, 299
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HinfI GANTC 1 cut(s) 136
HpaII CCGG 2 cut(s) 221, 262
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 3 cut(s) 172, 212, 387
Hpy188III TCNNGA 3 cut(s) 14, 37, 113
Hpy8I GTNNAC 3 cut(s) 172, 212, 387
HpyAV CCTTC 1 cut(s) 331
HpyCH4III ACNGT 3 cut(s) 55, 169, 216
HpyCH4IV ACGT 2 cut(s) 189, 324
HpyCH4V TGCA 4 cut(s) 255, 272, 305, 364
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 243, 252, 305
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 2 cut(s) 189, 324
Hsp92II CATG 1 cut(s) 316
HspAI GCGC 2 cut(s) 195, 299
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 9 cut(s) 170, 234, 275, 337, 361, 396, 403, 426, 453
Lsp1109I GCAGC 1 cut(s) 317
MaeI CTAG 1 cut(s) 14
MaeII ACGT 2 cut(s) 189, 324
MaeIII GTNAC 6 cut(s) 37, 145, 278, 320, 343, 406
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 246
MluNI TGGCCA 1 cut(s) 246
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 3 cut(s) 269, 351, 441
Mox20I TGGCCA 1 cut(s) 246
MscI TGGCCA 1 cut(s) 246
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 246
MspI CCGG 2 cut(s) 221, 262
MspR9I CCNGG 3 cut(s) 222, 263, 441
MvaI CCWGG 1 cut(s) 441
MvnI CGCG 2 cut(s) 299, 301
MwoI GCNNNNNNNGC 4 cut(s) 76, 243, 252, 305
NciI CCSGG 2 cut(s) 222, 263
NdeII GATC 1 cut(s) 175
NlaIII CATG 1 cut(s) 316
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 4 cut(s) 37, 145, 320, 406
OliI CACNNNNGTG 1 cut(s) 300
PaeR7I CTCGAG 1 cut(s) 71
PaqCI CACCTGC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 354
PkrI GCNGC 3 cut(s) 78, 162, 307
PmaCI CACGTG 1 cut(s) 190
PmlI CACGTG 1 cut(s) 190
Ppu21I YACGTR 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 439
PspCI CACGTG 1 cut(s) 190
PspEI GGTNACC 1 cut(s) 343
PspGI CCWGG 1 cut(s) 439
PspPI GGNCC 1 cut(s) 223
PspXI VCTCGAGB 1 cut(s) 71
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 3 cut(s) 77, 161, 306
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 3 cut(s) 222, 263, 441
SduI GDGCHC 1 cut(s) 72
SetI ASST 8 cut(s) 49, 72, 192, 252, 280, 327, 356, 362
Sfr274I CTCGAG 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SsiI CCGC 3 cut(s) 77, 160, 341
SspI AATATT 1 cut(s) 21
SspMI CTAG 1 cut(s) 14
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 3 cut(s) 220, 261, 439
TaaI ACNGT 3 cut(s) 55, 169, 216
TaiI ACGT 2 cut(s) 192, 327
TaqI TCGA 3 cut(s) 49, 72, 130
TatI WGTACW 1 cut(s) 3
TauI GCSGC 2 cut(s) 79, 163
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseFI GTSAC 4 cut(s) 37, 145, 320, 406
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 4 cut(s) 37, 145, 320, 406
Van91I CCANNNNNTGG 1 cut(s) 354
XbaI TCTAGA 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.