Rh3AG267100

long-chain-alcohol O-fatty-acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0029974
Physical Location & Seq
Reverse (-)
30251941 .. 30253188
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG267100.1

Sequence Viewer

Length: 336 bp
ATGGTAGCTGTGAAGGCATTGCTTTTGGCTCGAACTGTTTTTGGGTTAGAGCTCGAGCCGCAGTCCAACAAGCCTTATCTCTCAACTTCGCTTCAAGACTTTTGGGGCTATCGATGGAATCTAATGGTCACAAATATCCTGCGGCCAACAGTATACGATCTTACTCGGCACGTGTGCGCCCGTTTAGTTGGTGAACGGTGGCCGGGCCACGCTCTCTGCTTTGATGGCCACCTTTGCAGTCTCCGGGTTAATGCACGAGATTGCAACAGAAACATCCCGGAAACAAGCAAGAACCGGATTCACCAGCTGATACCAACTTGGCTTGAAAGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

111

Amino Acids

12.83

Weight (kDa)

9.13

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 19 - 60 1.6e-07 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029974)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0485321
rosa_samantha Rh3AG267100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 153
AciI CCGC 2 cut(s) 59, 142
AcoI YGGCCR 3 cut(s) 143, 200, 226
AcvI CACGTG 1 cut(s) 172
AfaI GTAC 1 cut(s) 331
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 2 cut(s) 95, 326
AluBI AGCT 3 cut(s) 8, 52, 307
AluI AGCT 3 cut(s) 8, 52, 307
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 4 cut(s) 143, 200, 205, 226
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 3 cut(s) 204, 245, 278
AsuHPI GGTGA 2 cut(s) 203, 293
AvaI CYCGRG 1 cut(s) 53
BalI TGGCCA 1 cut(s) 228
BanII GRGCYC 1 cut(s) 54
BauI CACGAG 1 cut(s) 255
BbrPI CACGTG 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 54
BccI CCATC 2 cut(s) 108, 218
BcnI CCSGG 3 cut(s) 204, 245, 278
BcoDI GTCTC 1 cut(s) 245
BisI GCNGC 2 cut(s) 59, 143
BlsI GCNGC 2 cut(s) 60, 144
Bme1390I CCNGG 3 cut(s) 204, 245, 278
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 205
BmrFI CCNGG 3 cut(s) 204, 245, 278
BpuMI CCSGG 3 cut(s) 204, 245, 278
Bsa29I ATCGAT 1 cut(s) 112
BsaAI YACGTR 1 cut(s) 172
BsaWI WCCGGW 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 17
BseCI ATCGAT 1 cut(s) 112
BseGI GGATG 1 cut(s) 273
BseMI GCAATG 1 cut(s) 17
BshFI GGCC 4 cut(s) 145, 202, 207, 228
BshVI ATCGAT 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 4 cut(s) 203, 244, 278, 295
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 4 cut(s) 145, 202, 207, 228
BsoBI CYCGRG 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 2 cut(s) 59, 142
BspANI GGCC 4 cut(s) 145, 202, 207, 228
BspDI ATCGAT 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 17
BssMI GATC 1 cut(s) 157
BssNAI GTATAC 1 cut(s) 154
BssSI CACGAG 1 cut(s) 255
Bst1107I GTATAC 1 cut(s) 154
Bst2BI CACGAG 1 cut(s) 255
Bst4CI ACNGT 3 cut(s) 37, 151, 198
BstBAI YACGTR 1 cut(s) 172
BstF5I GGATG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 4 cut(s) 14, 58, 225, 234
BstSCI CCNGG 3 cut(s) 202, 243, 276
BstZ17I GTATAC 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 112
BsuRI GGCC 4 cut(s) 145, 202, 207, 228
BsuTUI ATCGAT 1 cut(s) 112
BtsCI GGATG 1 cut(s) 273
CfoI GCGC 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 205
ClaI ATCGAT 1 cut(s) 112
Csp6I GTAC 1 cut(s) 330
CviAII CATG 1 cut(s) 333
CviQI GTAC 1 cut(s) 330
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
EaeI YGGCCR 3 cut(s) 143, 200, 226
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 52
Eco72I CACGTG 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 1 cut(s) 336
FaiI YATR 2 cut(s) 154, 334
FatI CATG 1 cut(s) 332
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 2 cut(s) 59, 143
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 2 cut(s) 59, 143
GlaI GCGC 1 cut(s) 178
GluI GCNGC 2 cut(s) 59, 143
HaeIII GGCC 4 cut(s) 145, 202, 207, 228
HapII CCGG 4 cut(s) 203, 244, 278, 295
HhaI GCGC 1 cut(s) 179
Hin1II CATG 1 cut(s) 336
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HinfI GANTC 2 cut(s) 118, 298
HpaII CCGG 4 cut(s) 203, 244, 278, 295
HphI GGTGA 2 cut(s) 203, 293
Hpy166II GTNNAC 2 cut(s) 154, 194
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 2 cut(s) 154, 194
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 3 cut(s) 37, 151, 198
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 237, 254, 264
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 58, 225, 234
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 336
HspAI GCGC 1 cut(s) 177
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 6 cut(s) 152, 216, 257, 291, 308, 317
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 54
MlsI TGGCCA 1 cut(s) 228
MluNI TGGCCA 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 90
Mox20I TGGCCA 1 cut(s) 228
MscI TGGCCA 1 cut(s) 228
MseI TTAA 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 4 cut(s) 203, 244, 278, 295
MspR9I CCNGG 3 cut(s) 204, 245, 278
MwoI GCNNNNNNNGC 4 cut(s) 14, 58, 225, 234
NciI CCSGG 3 cut(s) 204, 245, 278
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 336
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 127
PaeR7I CTCGAG 1 cut(s) 53
PfeI GAWTC 2 cut(s) 118, 298
PfoI TCCNGGA 1 cut(s) 276
PkrI GCNGC 2 cut(s) 60, 144
PmaCI CACGTG 1 cut(s) 172
PmlI CACGTG 1 cut(s) 172
Ppu21I YACGTR 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 54
PspCI CACGTG 1 cut(s) 172
PspPI GGNCC 1 cut(s) 205
PspXI VCTCGAGB 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 2 cut(s) 59, 143
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 205
ScrFI CCNGG 3 cut(s) 204, 245, 278
SduI GDGCHC 1 cut(s) 54
SetI ASST 5 cut(s) 10, 54, 174, 234, 309
Sfr274I CTCGAG 1 cut(s) 53
SlaI CTCGAG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SsiI CCGC 2 cut(s) 59, 142
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 3 cut(s) 202, 243, 276
TaaI ACNGT 3 cut(s) 37, 151, 198
TaiI ACGT 1 cut(s) 174
TaqI TCGA 3 cut(s) 31, 54, 112
TatI WGTACW 1 cut(s) 329
TauI GCSGC 2 cut(s) 61, 145
TfiI GAWTC 2 cut(s) 118, 298
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
XhoI CTCGAG 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.