RchiOBHm_Chr3g0485321

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0029974
Physical Location & Seq
Reverse (-)
31989336 .. 31989843
508 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44994

Sequence Viewer

Length: 468 bp
ATGTACTTGGGTCTAGAAATATTCTTTCCCCTTATCGTGACTTCAGCTCGAACTGTTTTTGGGTTAGAGCTCGAGCCGCAGTCCAACAAGCCTTATCTCTCAACTTCGCTTCAAGACTTTTGGGGCTATCGATGGAATCTAATGGTCACAAATATCCTGCGGCCAACAGTATACGATCTTACTCGGCACGTGTGCGCCCGTTTAGTTGGTGAACGGTGGCCGGGCCACGCTCTCTGCTTTGATGGCCACCTTTGCAGTCTCCGGGTTAATGCACGAGGTTACTTATTACTATCTCACGCGCGTGCAGCCCACATGGGAAGTGACGTGGATGTGAAGAAGGCGGTTACCAGCAGGTGGAGGTTGCACTCGGTGGTTTCGGGGCTGTTGACATTTGTGTTCTTGGCTGTGACAGGCAACTGGCTGTTCTTTCCTCAGTTGCCAGGAATGGTGTTGATACAAGGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

155

Amino Acids

17.58

Weight (kDa)

9.45

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 25 - 66 3.5e-07 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029974)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0485321
rosa_samantha Rh3AG267100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 342
Acc36I ACCTGC 1 cut(s) 342
AccB7I CCANNNNNTGG 1 cut(s) 354
AccI GTMKAC 1 cut(s) 171
AccII CGCG 2 cut(s) 299, 301
AciI CCGC 3 cut(s) 77, 160, 341
AcoI YGGCCR 3 cut(s) 161, 218, 244
AcuI CTGAAG 1 cut(s) 27
AcvI CACGTG 1 cut(s) 190
AdeI CACNNNGTG 1 cut(s) 370
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 354
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 1 cut(s) 113
AjiI CACGTC 1 cut(s) 325
AjnI CCWGG 1 cut(s) 439
AleI CACNNNNGTG 1 cut(s) 300
AluBI AGCT 2 cut(s) 47, 70
AluI AGCT 2 cut(s) 47, 70
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 263
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 4 cut(s) 161, 218, 223, 244
ApeKI GCWGC 1 cut(s) 305
AspLEI GCGC 2 cut(s) 197, 301
AspS9I GGNCC 1 cut(s) 223
AsuC2I CCSGG 2 cut(s) 222, 263
AsuHPI GGTGA 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 71
BalI TGGCCA 1 cut(s) 246
BanII GRGCYC 1 cut(s) 72
BauI CACGAG 1 cut(s) 273
BbrPI CACGTG 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 317
BccI CCATC 2 cut(s) 126, 236
BciT130I CCWGG 1 cut(s) 441
BcnI CCSGG 2 cut(s) 222, 263
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 342
BisI GCNGC 3 cut(s) 77, 161, 306
BlsI GCNGC 3 cut(s) 78, 162, 307
Bme1390I CCNGG 3 cut(s) 222, 263, 441
BmeT110I CYCGRG 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 223
BmrFI CCNGG 3 cut(s) 222, 263, 441
BpuMI CCSGG 2 cut(s) 222, 263
Bsa29I ATCGAT 1 cut(s) 130
BsaAI YACGTR 1 cut(s) 190
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse1I ACTGG 1 cut(s) 422
BseBI CCWGG 1 cut(s) 441
BseCI ATCGAT 1 cut(s) 130
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 1 cut(s) 422
BseXI GCAGC 1 cut(s) 317
BsgI GTGCAG 1 cut(s) 324
Bsh1236I CGCG 2 cut(s) 299, 301
BshFI GGCC 4 cut(s) 163, 220, 225, 246
BshVI ATCGAT 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 2 cut(s) 221, 262
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 263
BsnI GGCC 4 cut(s) 163, 220, 225, 246
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 3 cut(s) 77, 160, 341
BspANI GGCC 4 cut(s) 163, 220, 225, 246
BspCNI CTCAG 1 cut(s) 445
BspDI ATCGAT 1 cut(s) 130
BspFNI CGCG 2 cut(s) 299, 301
BspMI ACCTGC 1 cut(s) 342
BsrI ACTGG 1 cut(s) 422
BssMI GATC 1 cut(s) 175
BssNAI GTATAC 1 cut(s) 172
BssSI CACGAG 1 cut(s) 273
Bst1107I GTATAC 1 cut(s) 172
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 3 cut(s) 55, 169, 216
BstBAI YACGTR 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 432
BstEII GGTNACC 1 cut(s) 343
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 2 cut(s) 299, 301
BstHHI GCGC 2 cut(s) 197, 301
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 4 cut(s) 76, 243, 252, 305
BstNI CCWGG 1 cut(s) 441
BstPI GGTNACC 1 cut(s) 343
BstSCI CCNGG 3 cut(s) 220, 261, 439
BstUI CGCG 2 cut(s) 299, 301
BstV1I GCAGC 1 cut(s) 317
BstZ17I GTATAC 1 cut(s) 172
Bsu15I ATCGAT 1 cut(s) 130
BsuRI GGCC 4 cut(s) 163, 220, 225, 246
BsuTUI ATCGAT 1 cut(s) 130
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 1 cut(s) 334
BveI ACCTGC 1 cut(s) 342
Cac8I GCNNGC 1 cut(s) 303
CfoI GCGC 2 cut(s) 197, 301
Cfr13I GGNCC 1 cut(s) 223
ClaI ATCGAT 1 cut(s) 130
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 313
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 432
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
DraIII CACNNNGTG 1 cut(s) 370
EaeI YGGCCR 3 cut(s) 161, 218, 244
Ecl136II GAGCTC 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 27
Eco72I CACGTG 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 71
Eco91I GGTNACC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 72
FaeI CATG 1 cut(s) 316
FaiI YATR 2 cut(s) 172, 314
FatI CATG 1 cut(s) 312
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 77, 161, 306
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 3 cut(s) 77, 161, 306
FspBI CTAG 1 cut(s) 14
GlaI GCGC 2 cut(s) 196, 300
GluI GCNGC 3 cut(s) 77, 161, 306
HaeIII GGCC 4 cut(s) 163, 220, 225, 246
HapII CCGG 2 cut(s) 221, 262
HhaI GCGC 2 cut(s) 197, 301
Hin1II CATG 1 cut(s) 316
Hin6I GCGC 2 cut(s) 195, 299
HinP1I GCGC 2 cut(s) 195, 299
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HinfI GANTC 1 cut(s) 136
HpaII CCGG 2 cut(s) 221, 262
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 3 cut(s) 172, 212, 387
Hpy188III TCNNGA 3 cut(s) 14, 37, 113
Hpy8I GTNNAC 3 cut(s) 172, 212, 387
HpyAV CCTTC 1 cut(s) 331
HpyCH4III ACNGT 3 cut(s) 55, 169, 216
HpyCH4IV ACGT 2 cut(s) 189, 324
HpyCH4V TGCA 4 cut(s) 255, 272, 305, 364
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 243, 252, 305
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 2 cut(s) 189, 324
Hsp92II CATG 1 cut(s) 316
HspAI GCGC 2 cut(s) 195, 299
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 9 cut(s) 170, 234, 275, 337, 361, 396, 403, 426, 453
Lsp1109I GCAGC 1 cut(s) 317
MaeI CTAG 1 cut(s) 14
MaeII ACGT 2 cut(s) 189, 324
MaeIII GTNAC 6 cut(s) 37, 145, 278, 320, 343, 406
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 246
MluNI TGGCCA 1 cut(s) 246
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 3 cut(s) 269, 351, 441
Mox20I TGGCCA 1 cut(s) 246
MscI TGGCCA 1 cut(s) 246
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 246
MspI CCGG 2 cut(s) 221, 262
MspR9I CCNGG 3 cut(s) 222, 263, 441
MvaI CCWGG 1 cut(s) 441
MvnI CGCG 2 cut(s) 299, 301
MwoI GCNNNNNNNGC 4 cut(s) 76, 243, 252, 305
NciI CCSGG 2 cut(s) 222, 263
NdeII GATC 1 cut(s) 175
NlaIII CATG 1 cut(s) 316
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 4 cut(s) 37, 145, 320, 406
OliI CACNNNNGTG 1 cut(s) 300
PaeR7I CTCGAG 1 cut(s) 71
PaqCI CACCTGC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 354
PkrI GCNGC 3 cut(s) 78, 162, 307
PmaCI CACGTG 1 cut(s) 190
PmlI CACGTG 1 cut(s) 190
Ppu21I YACGTR 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 439
PspCI CACGTG 1 cut(s) 190
PspEI GGTNACC 1 cut(s) 343
PspGI CCWGG 1 cut(s) 439
PspPI GGNCC 1 cut(s) 223
PspXI VCTCGAGB 1 cut(s) 71
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 3 cut(s) 77, 161, 306
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 3 cut(s) 222, 263, 441
SduI GDGCHC 1 cut(s) 72
SetI ASST 8 cut(s) 49, 72, 192, 252, 280, 327, 356, 362
Sfr274I CTCGAG 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SsiI CCGC 3 cut(s) 77, 160, 341
SspI AATATT 1 cut(s) 21
SspMI CTAG 1 cut(s) 14
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 3 cut(s) 220, 261, 439
TaaI ACNGT 3 cut(s) 55, 169, 216
TaiI ACGT 2 cut(s) 192, 327
TaqI TCGA 3 cut(s) 49, 72, 130
TatI WGTACW 1 cut(s) 3
TauI GCSGC 2 cut(s) 79, 163
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseFI GTSAC 4 cut(s) 37, 145, 320, 406
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 4 cut(s) 37, 145, 320, 406
Van91I CCANNNNNTGG 1 cut(s) 354
XbaI TCTAGA 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.