Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024008

Physical Location & Seq

Genomic Coordinates Reverse (-)

39350817 .. 39351041

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGTGGGTTTGCGGGCACAGTGAAAGAGTAGCAATTACTTTTGCACTAGTTCACACTGCTGCTGGAATGCCAATTAGGATTACAAAGAATATTCGTATTTCTGCAGATTGCCACTCCTGGGTAAAAATAGTTTCAATGGTTACAGGTAGAGTCATTGTTTTGAGAGACACAAATCGCTTCCACCATTTCAAAGGAGGAGCATGTACTTGTAAGGACTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

74

Amino Acids

8.4

Weight (kDa)

9.69

Isoelectric Point (pI)

23.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	3 - 74	3.8e-30	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024008)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28611
malus_domestica	MD05G1363100.v1.1
rosa_chinensis	RchiOBHm_Chr3g0492561

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	135, 190
AhlI	ACTAGT	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	159
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	159
BsmI	GAATGC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	159
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	46
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	25, 54
Cac8I	GCNNGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	1 cut(s)	201
CviQI	GTAC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	116
FaeI	CATG	1 cut(s)	204
FaiI	YATR	1 cut(s)	202
FatI	CATG	1 cut(s)	200
FauI	CCCGC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	204
HinfI	GANTC	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	52
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4V	TGCA	2 cut(s)	44, 104
Hsp92II	CATG	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	5 cut(s)	48, 103, 129, 130, 205
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	2 cut(s)	33, 72
MlyI	GAGTC	1 cut(s)	159
MnlI	CCTC	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	118
NlaIII	CATG	1 cut(s)	204
NspI	RCATGY	1 cut(s)	204
PctI	GAATGC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SatI	GCNGC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	102
SgeI	CNNG	8 cut(s)	25, 59, 75, 129, 130, 156, 213, 219
SpeI	ACTAGT	1 cut(s)	46
Sse9I	AATT	2 cut(s)	33, 72
SsiI	CCGC	1 cut(s)	12
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	20
TasI	AATT	2 cut(s)	33, 72
TatI	WGTACW	1 cut(s)	203
TscAI	CASTG	2 cut(s)	25, 61
TseI	GCWGC	1 cut(s)	59
TspRI	CASTG	2 cut(s)	25, 61
XceI	RCATGY	1 cut(s)	204
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.