RchiOBHm_Chr3g0497301

UDP-sugar transporter

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
49145550 .. 49145965
416 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGCCTATTTTGTGTCTTGTTGTCTTGCTCTGTTCCTGTGTACTGGCATTCTTCCTGAATTACTGTATATTTCTTAATACGACAATAAATTCAGCACTAACGCAGACAATTTGCGGTAACTTGAAGGATTTCTTTACCATTGGACTTGGCTGGGTGATATTTGGTGGCCTTCCATTTGATATTGTAAGTGTCAACCGGTTCTCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.6

Weight (kDa)

5.7

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021370)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0497301
rosa_rugosa Rorug05G0242900
rosa_samantha Rh2AG484800 Rh3AG335500 Rh4DG262000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 88
AfaI GTAC 1 cut(s) 42
AgeI ACCGGT 1 cut(s) 195
AgsI TTSAA 1 cut(s) 124
AoxI GGCC 1 cut(s) 166
ApoI RAATTY 1 cut(s) 88
AsiGI ACCGGT 1 cut(s) 195
Asp700I GAANNNNTTC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 166
BsaWI WCCGGW 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 48
BseYI CCCAGC 1 cut(s) 150
BshFI GGCC 1 cut(s) 168
BshTI ACCGGT 1 cut(s) 195
BsiSI CCGG 1 cut(s) 196
BsmI GAATGC 1 cut(s) 47
BsnI GGCC 1 cut(s) 168
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 195
BsrI ACTGG 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 65
BstF5I GGATG 1 cut(s) 203
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 195
Csp6I GTAC 1 cut(s) 41
CspAI ACCGGT 1 cut(s) 195
CviJI RGCY 2 cut(s) 150, 168
CviKI_1 RGCY 2 cut(s) 150, 168
CviQI GTAC 1 cut(s) 41
FaiI YATR 1 cut(s) 68
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FokI GGATG 1 cut(s) 190
GsaI CCCAGC 1 cut(s) 154
HaeIII GGCC 1 cut(s) 168
HapII CCGG 1 cut(s) 196
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HpaII CCGG 1 cut(s) 196
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 2 cut(s) 41, 193
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 2 cut(s) 41, 193
HpyAV CCTTC 2 cut(s) 118, 179
HpyCH4III ACNGT 1 cut(s) 65
LpnPI CCDG 4 cut(s) 29, 49, 68, 136
MaeIII GTNAC 1 cut(s) 116
MboII GAAGA 1 cut(s) 43
MluCI AATT 3 cut(s) 58, 88, 108
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 1 cut(s) 75
MspI CCGG 1 cut(s) 196
Mva1269I GAATGC 1 cut(s) 47
PctI GAATGC 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 128
PinAI ACCGGT 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 150
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 75
SgeI CNNG 8 cut(s) 29, 37, 48, 56, 67, 133, 158, 163
Sse9I AATT 3 cut(s) 58, 88, 108
SsiI CCGC 1 cut(s) 114
TaaI ACNGT 1 cut(s) 65
TasI AATT 3 cut(s) 58, 88, 108
TatI WGTACW 1 cut(s) 40
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
XapI RAATTY 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.