Rorug05G0242900

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0021370
Physical Location & Seq
Reverse (-)
26021460 .. 26022441
982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0242900.1

Sequence Viewer

Length: 633 bp
ATGTCGCCGGACTGCGACGTCTGCACCTGCTGCGCCTGCCAGAATGGCGGCTCCAACGGTGATCACTCCGAAGATCTGTCGTTTTGCTATTCCTCTTCGGTCAAATACGTTCCTGTGCCGTCGAGCGATTCCGAGAAGCTACGGCGGGTCGTGACTGCTTCGATTAAGGGTTTCACCATCTGCGCCGGCCTCAAAGGCGGCCTCGCCGTCTTCTCCATCCTAGCTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTATGAATAATGAAGCAATTGTTGCTGTTTTGAAGGAGACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAGGCACATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGGAGGCCACCGTAGGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCGTCTATGCTTCTTACCGGGCATAACACGCAGCATACGAGCTTCGCTGTATACATACTTATGAGTGCTGCAGTGTTGGCCACGCGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACGGTGACATTTTCCTTATGTGTCTCTCCTCTTCGCAAATTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

210

Amino Acids

22.6

Weight (kDa)

9.48

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021370)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0497301
rosa_rugosa Rorug05G0242900
rosa_samantha Rh2AG484800 Rh3AG335500 Rh4DG262000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 35
AasI GACNNNNNNGTC 1 cut(s) 17
AatII GACGTC 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 35
AccI GTMKAC 2 cut(s) 495, 568
AccII CGCG 1 cut(s) 529
AciI CCGC 3 cut(s) 48, 145, 198
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 1 cut(s) 624
AcyI GRCGYC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 258
AflIII ACRYGT 1 cut(s) 527
AgsI TTSAA 1 cut(s) 307
AluBI AGCT 5 cut(s) 139, 224, 244, 407, 486
AluI AGCT 5 cut(s) 139, 224, 244, 407, 486
Alw26I GTCTC 2 cut(s) 305, 614
AoxI GGCC 4 cut(s) 187, 199, 391, 522
ApeKI GCWGC 3 cut(s) 30, 475, 512
ApoI RAATTY 1 cut(s) 624
AspLEI GCGC 2 cut(s) 35, 185
AspS9I GGNCC 1 cut(s) 443
AsuC2I CCSGG 1 cut(s) 463
AsuHPI GGTGA 3 cut(s) 71, 166, 602
AvaII GGWCC 1 cut(s) 443
BalI TGGCCA 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 202
BbvI GCAGC 3 cut(s) 17, 487, 499
BccI CCATC 2 cut(s) 185, 224
BceAI ACGGC 3 cut(s) 103, 158, 191
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 463
BcoDI GTCTC 2 cut(s) 305, 614
BfaI CTAG 2 cut(s) 221, 225
BfmI CTRYAG 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 35
BglI GCCNNNNNGGC 2 cut(s) 45, 195
BglII AGATCT 1 cut(s) 73
BisI GCNGC 5 cut(s) 31, 49, 199, 476, 513
BlsI GCNGC 5 cut(s) 32, 50, 200, 477, 514
Bme1390I CCNGG 1 cut(s) 463
Bme18I GGWCC 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 463
BpiI GAAGAC 1 cut(s) 202
BpuEI CTTGAG 1 cut(s) 337
BpuMI CCSGG 1 cut(s) 463
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 305
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse118I RCCGGY 1 cut(s) 185
BseGI GGATG 2 cut(s) 216, 373
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 3 cut(s) 244, 255, 271
BseRI GAGGAG 1 cut(s) 604
BseXI GCAGC 3 cut(s) 17, 487, 499
BsgI GTGCAG 1 cut(s) 7
Bsh1236I CGCG 1 cut(s) 529
BshFI GGCC 4 cut(s) 189, 201, 393, 524
BsiSI CCGG 3 cut(s) 8, 186, 462
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 2 cut(s) 305, 614
BsmFI GGGAC 1 cut(s) 352
BsnI GGCC 4 cut(s) 189, 201, 393, 524
Bso31I GGTCTC 1 cut(s) 305
Bsp143I GATC 2 cut(s) 61, 73
BspACI CCGC 3 cut(s) 48, 145, 198
BspANI GGCC 4 cut(s) 189, 201, 393, 524
BspCNI CTCAG 3 cut(s) 243, 256, 270
BspFNI CGCG 1 cut(s) 529
BspLI GGNNCC 1 cut(s) 52
BspMAI CTGCAG 1 cut(s) 517
BspMI ACCTGC 1 cut(s) 35
BspTNI GGTCTC 1 cut(s) 305
BsrFI RCCGGY 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 185
BssMI GATC 2 cut(s) 61, 73
BssNAI GTATAC 1 cut(s) 496
BssNI GRCGYC 1 cut(s) 18
Bst1107I GTATAC 1 cut(s) 496
Bst4CI ACNGT 5 cut(s) 59, 398, 447, 552, 590
Bst6I CTCTTC 2 cut(s) 100, 622
BstACI GRCGYC 1 cut(s) 18
BstAPI GCANNNNNTGC 2 cut(s) 30, 296
BstC8I GCNNGC 3 cut(s) 37, 187, 349
BstDEI CTNAG 5 cut(s) 230, 247, 257, 264, 408
BstENI CCTNNNNNAGG 1 cut(s) 256
BstF5I GGATG 2 cut(s) 216, 373
BstFNI CGCG 1 cut(s) 529
BstHHI GCGC 2 cut(s) 35, 185
BstKTI GATC 2 cut(s) 64, 76
BstMAI GTCTC 2 cut(s) 305, 614
BstMBI GATC 2 cut(s) 61, 73
BstMWI GCNNNNNNNGC 9 cut(s) 21, 30, 36, 45, 195, 296, 425, 472, 521
BstSCI CCNGG 1 cut(s) 461
BstSFI CTRYAG 1 cut(s) 513
BstUI CGCG 1 cut(s) 529
BstV1I GCAGC 3 cut(s) 17, 487, 499
BstV2I GAAGAC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BstZ17I GTATAC 1 cut(s) 496
BsuRI GGCC 4 cut(s) 189, 201, 393, 524
BtsCI GGATG 2 cut(s) 216, 373
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 2 cut(s) 369, 522
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 3 cut(s) 37, 187, 349
CfoI GCGC 2 cut(s) 35, 185
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 443
DdeI CTNAG 5 cut(s) 230, 247, 257, 264, 408
DpnI GATC 2 cut(s) 63, 75
DpnII GATC 2 cut(s) 61, 73
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 522
Eam1104I CTCTTC 2 cut(s) 100, 622
EarI CTCTTC 2 cut(s) 100, 622
Eco31I GGTCTC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 443
EcoNI CCTNNNNNAGG 1 cut(s) 256
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 1 cut(s) 352
FauI CCCGC 1 cut(s) 138
FbaI TGATCA 1 cut(s) 61
FblI GTMKAC 2 cut(s) 495, 568
Fnu4HI GCNGC 5 cut(s) 31, 49, 199, 476, 513
FokI GGATG 2 cut(s) 203, 380
Fsp4HI GCNGC 5 cut(s) 31, 49, 199, 476, 513
FspBI CTAG 2 cut(s) 221, 225
GlaI GCGC 2 cut(s) 34, 184
GluI GCNGC 5 cut(s) 31, 49, 199, 476, 513
HaeIII GGCC 4 cut(s) 189, 201, 393, 524
HapII CCGG 3 cut(s) 8, 186, 462
HhaI GCGC 2 cut(s) 35, 185
Hin1I GRCGYC 1 cut(s) 18
Hin6I GCGC 2 cut(s) 33, 183
HinP1I GCGC 2 cut(s) 33, 183
HinfI GANTC 2 cut(s) 128, 228
HpaII CCGG 3 cut(s) 8, 186, 462
HphI GGTGA 3 cut(s) 71, 166, 602
Hpy166II GTNNAC 2 cut(s) 496, 569
Hpy188I TCNGA 3 cut(s) 70, 133, 233
Hpy188III TCNNGA 2 cut(s) 151, 259
Hpy8I GTNNAC 2 cut(s) 496, 569
Hpy99I CGWCG 2 cut(s) 20, 124
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 5 cut(s) 59, 398, 447, 552, 590
HpyCH4IV ACGT 2 cut(s) 18, 108
HpyCH4V TGCA 3 cut(s) 24, 347, 515
HpyF10VI GCNNNNNNNGC 9 cut(s) 21, 30, 36, 45, 195, 296, 425, 472, 521
HpyF3I CTNAG 5 cut(s) 230, 247, 257, 264, 408
HpySE526I ACGT 2 cut(s) 18, 108
Hsp92I GRCGYC 1 cut(s) 18
HspAI GCGC 2 cut(s) 33, 183
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 2 cut(s) 61, 73
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 3 cut(s) 17, 487, 499
MaeI CTAG 2 cut(s) 221, 225
MaeII ACGT 2 cut(s) 18, 108
MaeIII GTNAC 2 cut(s) 151, 590
MalI GATC 2 cut(s) 63, 75
MboI GATC 2 cut(s) 61, 73
MboII GAAGA 4 cut(s) 83, 87, 202, 609
MfeI CAATTG 1 cut(s) 291
MflI RGATCY 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 524
MluCI AATT 2 cut(s) 291, 624
MluI ACGCGT 1 cut(s) 527
MluNI TGGCCA 1 cut(s) 524
MlyI GAGTC 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 9 cut(s) 103, 200, 212, 259, 262, 383, 408, 582, 625
Mox20I TGGCCA 1 cut(s) 524
MroNI GCCGGC 1 cut(s) 185
MscI TGGCCA 1 cut(s) 524
MseI TTAA 2 cut(s) 165, 540
MslI CAYNNNNRTG 1 cut(s) 503
Msp20I TGGCCA 1 cut(s) 524
MspI CCGG 3 cut(s) 8, 186, 462
MspR9I CCNGG 1 cut(s) 463
MunI CAATTG 1 cut(s) 291
MvnI CGCG 1 cut(s) 529
MwoI GCNNNNNNNGC 9 cut(s) 21, 30, 36, 45, 195, 296, 425, 472, 521
NaeI GCCGGC 1 cut(s) 187
NciI CCSGG 1 cut(s) 463
NdeII GATC 2 cut(s) 61, 73
NgoMIV GCCGGC 1 cut(s) 185
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 2 cut(s) 151, 590
PaqCI CACCTGC 1 cut(s) 35
PcsI WCGNNNNNNNCGW 2 cut(s) 479, 556
PdiI GCCGGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 5 cut(s) 32, 50, 200, 477, 514
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 443
PstI CTGCAG 1 cut(s) 517
PsuI RGATCY 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 503
SaqAI TTAA 2 cut(s) 165, 540
SatI GCNGC 5 cut(s) 31, 49, 199, 476, 513
Sau3AI GATC 2 cut(s) 61, 73
Sau96I GGNCC 1 cut(s) 443
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 463
SfcI CTRYAG 1 cut(s) 513
SinI GGWCC 1 cut(s) 443
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
Sse9I AATT 2 cut(s) 291, 624
SsiI CCGC 3 cut(s) 48, 145, 198
SspMI CTAG 2 cut(s) 221, 225
StyD4I CCNGG 1 cut(s) 461
TaaI ACNGT 5 cut(s) 59, 398, 447, 552, 590
TaiI ACGT 2 cut(s) 21, 111
TaqI TCGA 2 cut(s) 122, 161
TaqII GACCGA 1 cut(s) 88
TasI AATT 2 cut(s) 291, 624
TauI GCSGC 2 cut(s) 51, 201
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 2 cut(s) 165, 540
Tru9I TTAA 2 cut(s) 165, 540
TscAI CASTG 2 cut(s) 369, 522
TseFI GTSAC 2 cut(s) 151, 590
TseI GCWGC 3 cut(s) 30, 475, 512
Tsp45I GTSAC 2 cut(s) 151, 590
TspDTI ATGAA 2 cut(s) 293, 300
TspRI CASTG 2 cut(s) 369, 522
VpaK11BI GGWCC 1 cut(s) 443
XagI CCTNNNNNAGG 1 cut(s) 256
XapI RAATTY 1 cut(s) 624
XmiI GTMKAC 2 cut(s) 495, 568
XspI CTAG 2 cut(s) 221, 225
ZraI GACGTC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.