Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022678

Physical Location & Seq

Genomic Coordinates Forward (+)

10135032 .. 10135819

Gene Structure 788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCAATGGCAACCTCACCTCACTCCCTCCTCCTCCAAAACCCAACTCCCACTTTCCTCAAAAACCCCAAACTACCCTTCACCGCCGTCCCCATGACCTCCACCCGAATCTCCCCCACCACCACCGCAAAACCCATGTCGATCAAATGCGCTGCCACCACGACCCCAATCCAAGATCTCCGCCCGAACCCGCCCGAGTCCCAAGATCGGGTCTTTAACTTCGCCGCCGGGCCCGCCAACCTCCCGGAGAACGTTCTCAAGAAGGCCCAATCGGAGCTCTACAACTGGCGCGGATCTGGCATGAGCGTCATGGAAATGAGCCACCGCGGCAAGGAATTCTCCTCCATAATCCAGAAGGCCGAGTCCGACCTCCGAACCCTCTTGAATATTCCCCAAGAATATTCCGTCCTCTTCCTCCAAGCGGCGCCACCACCCAGTTCGCCGCGATCCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004647 GO:0004648 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006563 GO:0006564 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009555 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0016053 GO:0016311 GO:0016740 GO:0016769 GO:0016787 GO:0016788 GO:0016791 GO:0019752 GO:0022414 GO:0022622 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0042221 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko00750 ko01100 ko01120 ko01130 ko01200 ko01230 ko03018 map00260 map00680 map00750 map01100 map01120 map01130 map01200 map01230 map03018

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

151

Amino Acids

16.59

Weight (kDa)

9.84

Isoelectric Point (pI)

66.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	71 - 141	3.5e-10	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0022678)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097541
rosa_multiflora	Rmu_co8147652.1_g000001 Rmu_sc0005237.1_g000001
rosa_rugosa	Rorug05G0127100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AccII	CGCG	3 cut(s)	291, 327, 445
AclI	AACGTT	1 cut(s)	252
AclWI	GGATC	2 cut(s)	301, 441
AcsI	RAATTY	1 cut(s)	335
AcyI	GRCGYC	1 cut(s)	425
AfiI	CCNNNNNNNGG	4 cut(s)	207, 208, 331, 421
AgsI	TTSAA	1 cut(s)	385
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
Alw21I	GWGCWC	1 cut(s)	279
AlwI	GGATC	2 cut(s)	301, 441
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	230, 264, 357
ApaI	GGGCCC	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	335
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
AspLEI	GCGC	3 cut(s)	152, 291, 427
AspS9I	GGNCC	3 cut(s)	230, 231, 265
AsuC2I	CCSGG	2 cut(s)	229, 245
AsuHPI	GGTGA	2 cut(s)	9, 73
AvaI	CYCGRG	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	2 cut(s)	234, 279
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	139
BceAI	ACGGC	1 cut(s)	71
BcnI	CCSGG	2 cut(s)	229, 245
BfoI	RGCGCY	1 cut(s)	428
BglI	GCCNNNNNGGC	1 cut(s)	327
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	5 cut(s)	153, 225, 328, 423, 443
BlsI	GCNGC	5 cut(s)	154, 226, 329, 424, 444
Bme1390I	CCNGG	2 cut(s)	229, 245
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	3 cut(s)	230, 231, 265
BmiI	GGNNCC	2 cut(s)	232, 426
BmrFI	CCNGG	2 cut(s)	229, 245
BmrI	ACTGGG	1 cut(s)	429
BmuI	ACTGGG	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	2 cut(s)	229, 245
BsaHI	GRCGYC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	4 cut(s)	207, 208, 331, 421
Bse1I	ACTGG	2 cut(s)	290, 435
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	325
BseLI	CCNNNNNNNGG	4 cut(s)	207, 208, 331, 421
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	290, 435
BseRI	GAGGAG	3 cut(s)	20, 23, 331
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	139
Bsh1236I	CGCG	3 cut(s)	291, 327, 445
BshFI	GGCC	3 cut(s)	232, 266, 359
BshNI	GGYRCC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	228, 245
BslFI	GGGAC	2 cut(s)	74, 184
BslI	CCNNNNNNNGG	4 cut(s)	207, 208, 331, 421
BsmFI	GGGAC	2 cut(s)	74, 184
BsnI	GGCC	3 cut(s)	232, 266, 359
BsoBI	CYCGRG	1 cut(s)	194
Bsp120I	GGGCCC	1 cut(s)	230
Bsp1286I	GDGCHC	2 cut(s)	234, 279
Bsp143I	GATC	5 cut(s)	141, 175, 205, 293, 446
BspANI	GGCC	3 cut(s)	232, 266, 359
BspFNI	CGCG	3 cut(s)	291, 327, 445
BspLI	GGNNCC	2 cut(s)	232, 426
BspPI	GGATC	2 cut(s)	301, 441
BspT107I	GGYRCC	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	290, 435
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	5 cut(s)	141, 175, 205, 293, 446
BssNI	GRCGYC	1 cut(s)	425
Bst6I	CTCTTC	1 cut(s)	416
BstACI	GRCGYC	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	325
BstFNI	CGCG	3 cut(s)	291, 327, 445
BstH2I	RGCGCY	1 cut(s)	428
BstHHI	GCGC	3 cut(s)	152, 291, 427
BstKTI	GATC	5 cut(s)	144, 178, 208, 296, 449
BstMBI	GATC	5 cut(s)	141, 175, 205, 293, 446
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 297, 327
BstSCI	CCNGG	2 cut(s)	227, 243
BstSLI	GKGCMC	1 cut(s)	234
BstUI	CGCG	3 cut(s)	291, 327, 445
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	2 cut(s)	175, 293
BstYI	RGATCY	2 cut(s)	175, 293
BsuRI	GGCC	3 cut(s)	232, 266, 359
BtgI	CCRYGG	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	3 cut(s)	152, 291, 427
Cfr13I	GGNCC	3 cut(s)	230, 231, 265
Cfr42I	CCGCGG	1 cut(s)	328
CseI	GACGC	1 cut(s)	295
CviAII	CATG	4 cut(s)	94, 136, 301, 310
CviJI	RGCY	5 cut(s)	232, 266, 277, 321, 359
CviKI_1	RGCY	5 cut(s)	232, 266, 277, 321, 359
DinI	GGCGCC	1 cut(s)	426
DpnI	GATC	5 cut(s)	143, 177, 207, 295, 448
DpnII	GATC	5 cut(s)	141, 175, 205, 293, 446
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
EciI	GGCGGA	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	277
Eco24I	GRGCYC	2 cut(s)	234, 279
Eco53kI	GAGCTC	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	335
EcoT38I	GRGCYC	2 cut(s)	234, 279
EgeI	GGCGCC	1 cut(s)	426
EheI	GGCGCC	1 cut(s)	426
FaeI	CATG	4 cut(s)	97, 139, 304, 313
FaiI	YATR	5 cut(s)	95, 137, 302, 311, 347
FaqI	GGGAC	2 cut(s)	74, 184
FatI	CATG	4 cut(s)	93, 135, 300, 309
FauI	CCCGC	2 cut(s)	198, 241
Fnu4HI	GCNGC	5 cut(s)	153, 225, 328, 423, 443
FriOI	GRGCYC	2 cut(s)	234, 279
Fsp4HI	GCNGC	5 cut(s)	153, 225, 328, 423, 443
GlaI	GCGC	3 cut(s)	151, 290, 426
GluI	GCNGC	5 cut(s)	153, 225, 328, 423, 443
HaeII	RGCGCY	1 cut(s)	428
HaeIII	GGCC	3 cut(s)	232, 266, 359
HapII	CCGG	2 cut(s)	228, 245
HgaI	GACGC	1 cut(s)	295
HhaI	GCGC	3 cut(s)	152, 291, 427
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	4 cut(s)	97, 139, 304, 313
Hin6I	GCGC	3 cut(s)	150, 289, 425
HinP1I	GCGC	3 cut(s)	150, 289, 425
HinfI	GANTC	3 cut(s)	108, 197, 362
HpaII	CCGG	2 cut(s)	228, 245
HphI	GGTGA	2 cut(s)	9, 73
Hpy188I	TCNGA	3 cut(s)	274, 367, 374
Hpy188III	TCNNGA	3 cut(s)	259, 352, 382
HpyAV	CCTTC	3 cut(s)	88, 256, 349
HpyCH4IV	ACGT	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 297, 327
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	4 cut(s)	97, 139, 304, 313
HspAI	GCGC	3 cut(s)	150, 289, 425
KasI	GGCGCC	1 cut(s)	424
KspI	CCGCGG	1 cut(s)	328
Kzo9I	GATC	5 cut(s)	141, 175, 205, 293, 446
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	6 cut(s)	241, 258, 271, 282, 365, 448
Lsp1109I	GCAGC	1 cut(s)	139
MaeII	ACGT	1 cut(s)	252
MalI	GATC	5 cut(s)	143, 177, 207, 295, 448
MboI	GATC	5 cut(s)	141, 175, 205, 293, 446
MboII	GAAGA	1 cut(s)	403
MflI	RGATCY	2 cut(s)	175, 293
MhlI	GDGCHC	2 cut(s)	234, 279
MluCI	AATT	1 cut(s)	335
Mly113I	GGCGCC	1 cut(s)	425
MlyI	GAGTC	2 cut(s)	206, 371
MmeI	TCCRAC	1 cut(s)	390
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	327
MspI	CCGG	2 cut(s)	228, 245
MspR9I	CCNGG	2 cut(s)	229, 245
MvnI	CGCG	3 cut(s)	291, 327, 445
MwoI	GCNNNNNNNGC	3 cut(s)	233, 297, 327
NarI	GGCGCC	1 cut(s)	425
NciI	CCSGG	2 cut(s)	229, 245
NdeII	GATC	5 cut(s)	141, 175, 205, 293, 446
NlaIII	CATG	4 cut(s)	97, 139, 304, 313
NlaIV	GGNNCC	2 cut(s)	232, 426
NmeAIII	GCCGAG	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	108
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	5 cut(s)	154, 226, 329, 424, 444
PleI	GAGTC	2 cut(s)	205, 370
PluTI	GGCGCC	1 cut(s)	428
PpsI	GAGTC	2 cut(s)	205, 370
Psp124BI	GAGCTC	1 cut(s)	279
Psp1406I	AACGTT	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	232, 426
PspOMI	GGGCCC	1 cut(s)	230
PspPI	GGNCC	3 cut(s)	230, 231, 265
PsuI	RGATCY	2 cut(s)	175, 293
RseI	CAYNNNNRTG	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	279
SacII	CCGCGG	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	5 cut(s)	153, 225, 328, 423, 443
Sau3AI	GATC	5 cut(s)	141, 175, 205, 293, 446
Sau96I	GGNCC	3 cut(s)	230, 231, 265
SchI	GAGTC	2 cut(s)	206, 371
ScrFI	CCNGG	2 cut(s)	229, 245
SduI	GDGCHC	2 cut(s)	234, 279
SetI	ASST	7 cut(s)	17, 22, 101, 243, 255, 279, 372
SfoI	GGCGCC	1 cut(s)	426
Sfr303I	CCGCGG	1 cut(s)	328
SgrBI	CCGCGG	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	335
SspDI	GGCGCC	1 cut(s)	424
SspI	AATATT	2 cut(s)	388, 401
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	227, 243
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	140
TasI	AATT	1 cut(s)	335
TauI	GCSGC	4 cut(s)	227, 330, 425, 445
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseI	GCWGC	1 cut(s)	152
TspGWI	ACGGA	1 cut(s)	394
XapI	RAATTY	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.