Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8147652.1

Orthogroup ID

OG0022678

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 647

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8147652.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 647 bp

ccgccaccgccaccaatcaccatggcaatggcaacctcacctcactccctcctcctccaaaacccaactcccactttcctcaaaacccccaaactacccttcaccgccgtccccatgacctccacccgaatctcccccaccaccaccgcaaaacccatgtcgatcaaatgcgctgccaccacgaccccaatccaagatctccgcccgaacccgcccgagtcccaagatcgggtctttaacttcgccgccgggcccgccaacctcccggagaacgttctcaagaaggcccaatcggagctctacaactggcgcggatctggcatgagcgtcatggaaatgagccaccgcggcaaggaattctcctccataatccagaaggccgagtccgacctccgaaccctcttgaatattccccaagaatattccgtcctcttcctccaaggcggcgccaccacccagttcgccgcgatcccactcaatctgtgcaagcccgatgataaagtggattacttggttaccgggtcgtggggtgacaaggccttcaaggaggcccagaagtacagcaagcccaaggtgatctggtccggtaagtcggaaaagtacacaaagattccggcgtttgatgctctagagcagaccccagatgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004647 GO:0004648 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006563 GO:0006564 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009555 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0016053 GO:0016311 GO:0016740 GO:0016769 GO:0016787 GO:0016788 GO:0016791 GO:0019752 GO:0022414 GO:0022622 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0042221 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko00750 ko01100 ko01120 ko01130 ko01200 ko01230 ko03018 map00260 map00680 map00750 map01100 map01120 map01130 map01200 map01230 map03018

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

216

Amino Acids

23.72

Weight (kDa)

9.17

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022678)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097541
rosa_multiflora	Rmu_co8147652.1_g000001 Rmu_sc0005237.1_g000001
rosa_rugosa	Rorug05G0127100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	446
AccII	CGCG	3 cut(s)	312, 348, 467
AclI	AACGTT	1 cut(s)	273
AclWI	GGATC	2 cut(s)	322, 463
AcsI	RAATTY	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	2 cut(s)	560, 602
AfiI	CCNNNNNNNGG	4 cut(s)	228, 229, 352, 525
AgsI	TTSAA	2 cut(s)	406, 544
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw21I	GWGCWC	1 cut(s)	300
AlwI	GGATC	2 cut(s)	322, 463
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	5 cut(s)	251, 285, 378, 537, 549
ApaI	GGGCCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	356
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspLEI	GCGC	3 cut(s)	173, 312, 449
AspS9I	GGNCC	5 cut(s)	251, 252, 286, 550, 582
AsuC2I	CCSGG	3 cut(s)	250, 266, 520
AsuHPI	GGTGA	5 cut(s)	10, 30, 94, 542, 586
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	582
BaeGI	GKGCMC	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	2 cut(s)	255, 300
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	160
BceAI	ACGGC	1 cut(s)	92
BcnI	CCSGG	3 cut(s)	250, 266, 520
BfaI	CTAG	1 cut(s)	629
BfoI	RGCGCY	1 cut(s)	450
BglI	GCCNNNNNGGC	1 cut(s)	348
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	5 cut(s)	174, 246, 349, 445, 465
BlsI	GCNGC	5 cut(s)	175, 247, 350, 446, 466
Bme1390I	CCNGG	3 cut(s)	250, 266, 520
Bme18I	GGWCC	1 cut(s)	582
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	5 cut(s)	251, 252, 286, 550, 582
BmiI	GGNNCC	2 cut(s)	253, 448
BmrFI	CCNGG	3 cut(s)	250, 266, 520
BmrI	ACTGGG	1 cut(s)	451
BmsI	GCATC	2 cut(s)	613, 634
BmuI	ACTGGG	1 cut(s)	451
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	3 cut(s)	250, 266, 520
BsaHI	GRCGYC	1 cut(s)	447
BsaJI	CCNNGG	4 cut(s)	21, 346, 439, 570
BsaWI	WCCGGW	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	4 cut(s)	228, 229, 352, 525
Bse1I	ACTGG	2 cut(s)	311, 457
Bse3DI	GCAATG	1 cut(s)	33
BseDI	CCNNGG	4 cut(s)	21, 346, 439, 570
BseLI	CCNNNNNNNGG	4 cut(s)	228, 229, 352, 525
BseMI	GCAATG	1 cut(s)	33
BseNI	ACTGG	2 cut(s)	311, 457
BseRI	GAGGAG	3 cut(s)	41, 44, 352
BseSI	GKGCMC	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	160
Bsh1236I	CGCG	3 cut(s)	312, 348, 467
BshFI	GGCC	5 cut(s)	253, 287, 380, 539, 551
BshNI	GGYRCC	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	5 cut(s)	249, 266, 519, 585, 614
BslFI	GGGAC	2 cut(s)	95, 205
BslI	CCNNNNNNNGG	4 cut(s)	228, 229, 352, 525
BsmFI	GGGAC	2 cut(s)	95, 205
BsnI	GGCC	5 cut(s)	253, 287, 380, 539, 551
BsoBI	CYCGRG	1 cut(s)	215
Bsp120I	GGGCCC	1 cut(s)	251
Bsp1286I	GDGCHC	2 cut(s)	255, 300
Bsp143I	GATC	6 cut(s)	162, 196, 226, 314, 468, 576
Bsp19I	CCATGG	1 cut(s)	21
BspANI	GGCC	5 cut(s)	253, 287, 380, 539, 551
BspFNI	CGCG	3 cut(s)	312, 348, 467
BspLI	GGNNCC	2 cut(s)	253, 448
BspPI	GGATC	2 cut(s)	322, 463
BspT107I	GGYRCC	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	311, 457
BssECI	CCNNGG	4 cut(s)	21, 346, 439, 570
BssMI	GATC	6 cut(s)	162, 196, 226, 314, 468, 576
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	3 cut(s)	21, 439, 570
Bst6I	CTCTTC	1 cut(s)	437
BstACI	GRCGYC	1 cut(s)	447
BstC8I	GCNNGC	3 cut(s)	255, 488, 566
BstDSI	CCRYGG	2 cut(s)	21, 346
BstEII	GGTNACC	1 cut(s)	514
BstFNI	CGCG	3 cut(s)	312, 348, 467
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	3 cut(s)	173, 312, 449
BstKTI	GATC	6 cut(s)	165, 199, 229, 317, 471, 579
BstMBI	GATC	6 cut(s)	162, 196, 226, 314, 468, 576
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 318, 348, 623
BstPI	GGTNACC	1 cut(s)	514
BstSCI	CCNGG	3 cut(s)	248, 264, 518
BstSLI	GKGCMC	1 cut(s)	255
BstUI	CGCG	3 cut(s)	312, 348, 467
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	2 cut(s)	196, 314
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	2 cut(s)	196, 314
BsuRI	GGCC	5 cut(s)	253, 287, 380, 539, 551
BtgI	CCRYGG	2 cut(s)	21, 346
Cac8I	GCNNGC	3 cut(s)	255, 488, 566
CfoI	GCGC	3 cut(s)	173, 312, 449
Cfr13I	GGNCC	5 cut(s)	251, 252, 286, 550, 582
Cfr42I	CCGCGG	1 cut(s)	349
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	559, 601
CviAII	CATG	5 cut(s)	22, 115, 157, 322, 331
CviJI	RGCY	9 cut(s)	253, 287, 298, 342, 380, 490, 539, 551, 568
CviKI_1	RGCY	9 cut(s)	253, 287, 298, 342, 380, 490, 539, 551, 568
CviQI	GTAC	2 cut(s)	559, 601
DinI	GGCGCC	1 cut(s)	448
DpnI	GATC	6 cut(s)	164, 198, 228, 316, 470, 578
DpnII	GATC	6 cut(s)	162, 196, 226, 314, 468, 576
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
EciI	GGCGGA	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	298
Eco130I	CCWWGG	3 cut(s)	21, 439, 570
Eco147I	AGGCCT	1 cut(s)	539
Eco24I	GRGCYC	2 cut(s)	255, 300
Eco47I	GGWCC	1 cut(s)	582
Eco53kI	GAGCTC	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	215
Eco91I	GGTNACC	1 cut(s)	514
EcoICRI	GAGCTC	1 cut(s)	298
EcoO65I	GGTNACC	1 cut(s)	514
EcoRI	GAATTC	1 cut(s)	356
EcoT14I	CCWWGG	3 cut(s)	21, 439, 570
EcoT38I	GRGCYC	2 cut(s)	255, 300
EgeI	GGCGCC	1 cut(s)	448
EheI	GGCGCC	1 cut(s)	448
ErhI	CCWWGG	3 cut(s)	21, 439, 570
FaeI	CATG	5 cut(s)	25, 118, 160, 325, 334
FaiI	YATR	6 cut(s)	23, 116, 158, 323, 332, 368
FaqI	GGGAC	2 cut(s)	95, 205
FatI	CATG	5 cut(s)	21, 114, 156, 321, 330
FauI	CCCGC	2 cut(s)	219, 262
Fnu4HI	GCNGC	5 cut(s)	174, 246, 349, 445, 465
FriOI	GRGCYC	2 cut(s)	255, 300
Fsp4HI	GCNGC	5 cut(s)	174, 246, 349, 445, 465
FspBI	CTAG	1 cut(s)	629
GlaI	GCGC	3 cut(s)	172, 311, 448
GluI	GCNGC	5 cut(s)	174, 246, 349, 445, 465
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	5 cut(s)	253, 287, 380, 539, 551
HapII	CCGG	5 cut(s)	249, 266, 519, 585, 614
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	3 cut(s)	173, 312, 449
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	5 cut(s)	25, 118, 160, 325, 334
Hin6I	GCGC	3 cut(s)	171, 310, 447
HinP1I	GCGC	3 cut(s)	171, 310, 447
HinfI	GANTC	4 cut(s)	129, 218, 383, 610
HpaII	CCGG	5 cut(s)	249, 266, 519, 585, 614
HphI	GGTGA	5 cut(s)	10, 30, 94, 542, 586
Hpy166II	GTNNAC	1 cut(s)	603
Hpy188I	TCNGA	4 cut(s)	295, 388, 395, 595
Hpy188III	TCNNGA	4 cut(s)	280, 373, 403, 629
Hpy8I	GTNNAC	1 cut(s)	603
HpyAV	CCTTC	4 cut(s)	109, 277, 370, 550
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	1 cut(s)	486
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 318, 348, 623
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	5 cut(s)	25, 118, 160, 325, 334
HspAI	GCGC	3 cut(s)	171, 310, 447
KasI	GGCGCC	1 cut(s)	446
KspI	CCGCGG	1 cut(s)	349
Kzo9I	GATC	6 cut(s)	162, 196, 226, 314, 468, 576
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	2 cut(s)	613, 634
MaeI	CTAG	1 cut(s)	629
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	514, 530
MalI	GATC	6 cut(s)	164, 198, 228, 316, 470, 578
MboI	GATC	6 cut(s)	162, 196, 226, 314, 468, 576
MboII	GAAGA	1 cut(s)	424
MflI	RGATCY	2 cut(s)	196, 314
MhlI	GDGCHC	2 cut(s)	255, 300
MluCI	AATT	1 cut(s)	356
Mly113I	GGCGCC	1 cut(s)	447
MlyI	GAGTC	2 cut(s)	227, 392
MmeI	TCCRAC	2 cut(s)	411, 573
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	2 cut(s)	26, 335
MspA1I	CMGCKG	1 cut(s)	348
MspI	CCGG	5 cut(s)	249, 266, 519, 585, 614
MspR9I	CCNGG	3 cut(s)	250, 266, 520
MvnI	CGCG	3 cut(s)	312, 348, 467
MwoI	GCNNNNNNNGC	4 cut(s)	254, 318, 348, 623
NarI	GGCGCC	1 cut(s)	447
NciI	CCSGG	3 cut(s)	250, 266, 520
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	6 cut(s)	162, 196, 226, 314, 468, 576
NlaIII	CATG	5 cut(s)	25, 118, 160, 325, 334
NlaIV	GGNNCC	2 cut(s)	253, 448
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	530
PceI	AGGCCT	1 cut(s)	539
PfeI	GAWTC	2 cut(s)	129, 610
PfoI	TCCNGGA	1 cut(s)	264
PkrI	GCNGC	5 cut(s)	175, 247, 350, 446, 466
PleI	GAGTC	2 cut(s)	226, 391
PluTI	GGCGCC	1 cut(s)	450
PpsI	GAGTC	2 cut(s)	226, 391
Psp124BI	GAGCTC	1 cut(s)	300
Psp1406I	AACGTT	1 cut(s)	273
PspEI	GGTNACC	1 cut(s)	514
PspN4I	GGNNCC	2 cut(s)	253, 448
PspOMI	GGGCCC	1 cut(s)	251
PspPI	GGNCC	5 cut(s)	251, 252, 286, 550, 582
PsuI	RGATCY	2 cut(s)	196, 314
RsaI	GTAC	2 cut(s)	560, 602
RsaNI	GTAC	2 cut(s)	559, 601
RseI	CAYNNNNRTG	2 cut(s)	26, 335
SacI	GAGCTC	1 cut(s)	300
SacII	CCGCGG	1 cut(s)	349
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	5 cut(s)	174, 246, 349, 445, 465
Sau3AI	GATC	6 cut(s)	162, 196, 226, 314, 468, 576
Sau96I	GGNCC	5 cut(s)	251, 252, 286, 550, 582
SchI	GAGTC	2 cut(s)	227, 392
ScrFI	CCNGG	3 cut(s)	250, 266, 520
SduI	GDGCHC	2 cut(s)	255, 300
SetI	ASST	8 cut(s)	38, 43, 122, 264, 276, 300, 393, 576
SfaNI	GCATC	2 cut(s)	613, 634
SfoI	GGCGCC	1 cut(s)	448
Sfr303I	CCGCGG	1 cut(s)	349
SgrBI	CCGCGG	1 cut(s)	349
SinI	GGWCC	1 cut(s)	582
SmiMI	CAYNNNNRTG	2 cut(s)	26, 335
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	356
SseBI	AGGCCT	1 cut(s)	539
SspDI	GGCGCC	1 cut(s)	446
SspI	AATATT	2 cut(s)	409, 422
SspMI	CTAG	1 cut(s)	629
SstI	GAGCTC	1 cut(s)	300
StuI	AGGCCT	1 cut(s)	539
StyD4I	CCNGG	3 cut(s)	248, 264, 518
StyI	CCWWGG	3 cut(s)	21, 439, 570
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	161
TasI	AATT	1 cut(s)	356
TatI	WGTACW	2 cut(s)	558, 600
TauI	GCSGC	4 cut(s)	248, 351, 447, 467
TfiI	GAWTC	2 cut(s)	129, 610
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	530
TspGWI	ACGGA	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	582
XapI	RAATTY	1 cut(s)	356
XbaI	TCTAGA	1 cut(s)	628
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.