RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0099481 RchiOBHm_Chr5g0042331 |
| rosa_samantha | Rh5AG285500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 50 |
| AgsI | TTSAA | 1 cut(s) | 132 |
| AluBI | AGCT | 1 cut(s) | 70 |
| AluI | AGCT | 1 cut(s) | 70 |
| Alw21I | GWGCWC | 1 cut(s) | 72 |
| Alw26I | GTCTC | 1 cut(s) | 106 |
| AlwI | GGATC | 1 cut(s) | 50 |
| AoxI | GGCC | 1 cut(s) | 3 |
| AspLEI | GCGC | 1 cut(s) | 53 |
| AsuHPI | GGTGA | 1 cut(s) | 117 |
| BanII | GRGCYC | 1 cut(s) | 72 |
| Bbv12I | GWGCWC | 1 cut(s) | 72 |
| BcoDI | GTCTC | 1 cut(s) | 106 |
| BpuEI | CTTGAG | 1 cut(s) | 130 |
| BsaI | GGTCTC | 1 cut(s) | 106 |
| BsaWI | WCCGGW | 1 cut(s) | 115 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsiHKAI | GWGCWC | 1 cut(s) | 72 |
| BsiSI | CCGG | 1 cut(s) | 116 |
| BsmAI | GTCTC | 1 cut(s) | 106 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bso31I | GGTCTC | 1 cut(s) | 106 |
| Bsp1286I | GDGCHC | 1 cut(s) | 72 |
| Bsp143I | GATC | 3 cut(s) | 42, 80, 95 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspPI | GGATC | 1 cut(s) | 50 |
| BspTNI | GGTCTC | 1 cut(s) | 106 |
| BssMI | GATC | 3 cut(s) | 42, 80, 95 |
| BstC8I | GCNNGC | 1 cut(s) | 49 |
| BstHHI | GCGC | 1 cut(s) | 53 |
| BstKTI | GATC | 3 cut(s) | 45, 83, 98 |
| BstMAI | GTCTC | 1 cut(s) | 106 |
| BstMBI | GATC | 3 cut(s) | 42, 80, 95 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| Cac8I | GCNNGC | 1 cut(s) | 49 |
| CfoI | GCGC | 1 cut(s) | 53 |
| CviJI | RGCY | 2 cut(s) | 5, 70 |
| CviKI_1 | RGCY | 2 cut(s) | 5, 70 |
| DpnI | GATC | 3 cut(s) | 44, 82, 97 |
| DpnII | GATC | 3 cut(s) | 42, 80, 95 |
| Ecl136II | GAGCTC | 1 cut(s) | 70 |
| Eco24I | GRGCYC | 1 cut(s) | 72 |
| Eco31I | GGTCTC | 1 cut(s) | 106 |
| Eco53kI | GAGCTC | 1 cut(s) | 70 |
| EcoICRI | GAGCTC | 1 cut(s) | 70 |
| EcoT38I | GRGCYC | 1 cut(s) | 72 |
| FaiI | YATR | 1 cut(s) | 139 |
| FriOI | GRGCYC | 1 cut(s) | 72 |
| GlaI | GCGC | 1 cut(s) | 52 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 1 cut(s) | 116 |
| HhaI | GCGC | 1 cut(s) | 53 |
| Hin6I | GCGC | 1 cut(s) | 51 |
| HinP1I | GCGC | 1 cut(s) | 51 |
| HinfI | GANTC | 2 cut(s) | 88, 119 |
| HpaII | CCGG | 1 cut(s) | 116 |
| HphI | GGTGA | 1 cut(s) | 117 |
| Hpy188I | TCNGA | 1 cut(s) | 38 |
| Hpy99I | CGWCG | 1 cut(s) | 38 |
| HpyAV | CCTTC | 1 cut(s) | 138 |
| HspAI | GCGC | 1 cut(s) | 51 |
| Kzo9I | GATC | 3 cut(s) | 42, 80, 95 |
| LpnPI | CCDG | 2 cut(s) | 61, 129 |
| MaeIII | GTNAC | 1 cut(s) | 123 |
| MalI | GATC | 3 cut(s) | 44, 82, 97 |
| MboI | GATC | 3 cut(s) | 42, 80, 95 |
| MboII | GAAGA | 1 cut(s) | 105 |
| MhlI | GDGCHC | 1 cut(s) | 72 |
| MmeI | TCCRAC | 1 cut(s) | 16 |
| MnlI | CCTC | 2 cut(s) | 16, 32 |
| MspI | CCGG | 1 cut(s) | 116 |
| NdeII | GATC | 3 cut(s) | 42, 80, 95 |
| NmuCI | GTSAC | 1 cut(s) | 123 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 69 |
| PfeI | GAWTC | 2 cut(s) | 88, 119 |
| Psp124BI | GAGCTC | 1 cut(s) | 72 |
| SacI | GAGCTC | 1 cut(s) | 72 |
| Sau3AI | GATC | 3 cut(s) | 42, 80, 95 |
| SduI | GDGCHC | 1 cut(s) | 72 |
| SetI | ASST | 3 cut(s) | 72, 110, 130 |
| SgeI | CNNG | 5 cut(s) | 31, 60, 83, 121, 128 |
| SmlI | CTYRAG | 1 cut(s) | 109 |
| SmoI | CTYRAG | 1 cut(s) | 109 |
| SstI | GAGCTC | 1 cut(s) | 72 |
| TaqI | TCGA | 4 cut(s) | 18, 72, 86, 91 |
| TfiI | GAWTC | 2 cut(s) | 88, 119 |
| TseFI | GTSAC | 1 cut(s) | 123 |
| Tsp45I | GTSAC | 1 cut(s) | 123 |