RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0099481 RchiOBHm_Chr5g0042331 |
| rosa_samantha | Rh5AG285500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 165, 192, 204, 231 |
| AclWI | GGATC | 1 cut(s) | 50 |
| AcoI | YGGCCR | 2 cut(s) | 178, 282 |
| AcuI | CTGAAG | 1 cut(s) | 118 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 220 |
| AjnI | CCWGG | 1 cut(s) | 156 |
| AluBI | AGCT | 1 cut(s) | 257 |
| AluI | AGCT | 1 cut(s) | 257 |
| Alw26I | GTCTC | 1 cut(s) | 110 |
| AlwI | GGATC | 1 cut(s) | 50 |
| AoxI | GGCC | 4 cut(s) | 3, 178, 211, 282 |
| ApeKI | GCWGC | 1 cut(s) | 153 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 80, 112 |
| AspLEI | GCGC | 2 cut(s) | 53, 70 |
| AsuC2I | CCSGG | 1 cut(s) | 286 |
| AsuHPI | GGTGA | 3 cut(s) | 121, 245, 304 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 228, 261 |
| BalI | TGGCCA | 1 cut(s) | 180 |
| BbvI | GCAGC | 1 cut(s) | 165 |
| BccI | CCATC | 1 cut(s) | 189 |
| BceAI | ACGGC | 1 cut(s) | 227 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 47, 81 |
| BciT130I | CCWGG | 1 cut(s) | 158 |
| BcnI | CCSGG | 1 cut(s) | 286 |
| BcoDI | GTCTC | 1 cut(s) | 110 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 162 |
| BisI | GCNGC | 1 cut(s) | 154 |
| BlsI | GCNGC | 1 cut(s) | 155 |
| Bme1390I | CCNGG | 2 cut(s) | 158, 286 |
| BmrFI | CCNGG | 2 cut(s) | 158, 286 |
| BmsI | GCATC | 1 cut(s) | 55 |
| BpuMI | CCSGG | 1 cut(s) | 286 |
| BsaJI | CCNNGG | 2 cut(s) | 157, 243 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 220 |
| Bse1I | ACTGG | 1 cut(s) | 124 |
| BseBI | CCWGG | 1 cut(s) | 158 |
| BseDI | CCNNGG | 2 cut(s) | 157, 243 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 220 |
| BseNI | ACTGG | 1 cut(s) | 124 |
| BseXI | GCAGC | 1 cut(s) | 165 |
| BshFI | GGCC | 4 cut(s) | 5, 180, 213, 284 |
| BsiSI | CCGG | 1 cut(s) | 285 |
| BslFI | GGGAC | 1 cut(s) | 301 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 220 |
| BsmAI | GTCTC | 1 cut(s) | 110 |
| BsmFI | GGGAC | 1 cut(s) | 301 |
| BsnI | GGCC | 4 cut(s) | 5, 180, 213, 284 |
| Bsp143I | GATC | 2 cut(s) | 42, 80 |
| BspACI | CCGC | 4 cut(s) | 165, 192, 204, 231 |
| BspANI | GGCC | 4 cut(s) | 5, 180, 213, 284 |
| BspPI | GGATC | 1 cut(s) | 50 |
| BsrI | ACTGG | 1 cut(s) | 124 |
| BssECI | CCNNGG | 2 cut(s) | 157, 243 |
| BssMI | GATC | 2 cut(s) | 42, 80 |
| Bst2UI | CCWGG | 1 cut(s) | 158 |
| Bst4CI | ACNGT | 4 cut(s) | 113, 176, 268, 292 |
| BstC8I | GCNNGC | 1 cut(s) | 49 |
| BstDSI | CCRYGG | 1 cut(s) | 243 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 218 |
| BstHHI | GCGC | 2 cut(s) | 53, 70 |
| BstKTI | GATC | 2 cut(s) | 45, 83 |
| BstMAI | GTCTC | 1 cut(s) | 110 |
| BstMBI | GATC | 2 cut(s) | 42, 80 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 162, 210 |
| BstNI | CCWGG | 1 cut(s) | 158 |
| BstSCI | CCNGG | 2 cut(s) | 156, 284 |
| BstV1I | GCAGC | 1 cut(s) | 165 |
| BsuRI | GGCC | 4 cut(s) | 5, 180, 213, 284 |
| BtgI | CCRYGG | 1 cut(s) | 243 |
| Cac8I | GCNNGC | 1 cut(s) | 49 |
| CfoI | GCGC | 2 cut(s) | 53, 70 |
| CviJI | RGCY | 7 cut(s) | 5, 156, 180, 213, 242, 257, 284 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 156, 180, 213, 242, 257, 284 |
| DpnI | GATC | 2 cut(s) | 44, 82 |
| DpnII | GATC | 2 cut(s) | 42, 80 |
| EaeI | YGGCCR | 2 cut(s) | 178, 282 |
| EciI | GGCGGA | 1 cut(s) | 207 |
| Eco57I | CTGAAG | 1 cut(s) | 118 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 218 |
| EcoRII | CCWGG | 1 cut(s) | 156 |
| FaiI | YATR | 3 cut(s) | 143, 260, 308 |
| FaqI | GGGAC | 1 cut(s) | 301 |
| Fnu4HI | GCNGC | 1 cut(s) | 154 |
| Fsp4HI | GCNGC | 1 cut(s) | 154 |
| GlaI | GCGC | 2 cut(s) | 52, 69 |
| GluI | GCNGC | 1 cut(s) | 154 |
| HaeIII | GGCC | 4 cut(s) | 5, 180, 213, 284 |
| HapII | CCGG | 1 cut(s) | 285 |
| HhaI | GCGC | 2 cut(s) | 53, 70 |
| Hin6I | GCGC | 2 cut(s) | 51, 68 |
| HinP1I | GCGC | 2 cut(s) | 51, 68 |
| HinfI | GANTC | 3 cut(s) | 88, 123, 295 |
| HpaII | CCGG | 1 cut(s) | 285 |
| HphI | GGTGA | 3 cut(s) | 121, 245, 304 |
| Hpy188I | TCNGA | 1 cut(s) | 38 |
| Hpy188III | TCNNGA | 3 cut(s) | 185, 218, 299 |
| Hpy99I | CGWCG | 1 cut(s) | 38 |
| HpyAV | CCTTC | 4 cut(s) | 87, 142, 182, 224 |
| HpyCH4III | ACNGT | 4 cut(s) | 113, 176, 268, 292 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 162, 210 |
| HspAI | GCGC | 2 cut(s) | 51, 68 |
| Kzo9I | GATC | 2 cut(s) | 42, 80 |
| LpnPI | CCDG | 6 cut(s) | 61, 105, 143, 170, 284, 298 |
| Lsp1109I | GCAGC | 1 cut(s) | 165 |
| LweI | GCATC | 1 cut(s) | 55 |
| MaeIII | GTNAC | 2 cut(s) | 127, 170 |
| MalI | GATC | 2 cut(s) | 44, 82 |
| MboI | GATC | 2 cut(s) | 42, 80 |
| MlsI | TGGCCA | 1 cut(s) | 180 |
| MluCI | AATT | 1 cut(s) | 303 |
| MluNI | TGGCCA | 1 cut(s) | 180 |
| MmeI | TCCRAC | 1 cut(s) | 16 |
| MnlI | CCTC | 7 cut(s) | 16, 32, 155, 188, 214, 221, 268 |
| Mox20I | TGGCCA | 1 cut(s) | 180 |
| MscI | TGGCCA | 1 cut(s) | 180 |
| Msp20I | TGGCCA | 1 cut(s) | 180 |
| MspI | CCGG | 1 cut(s) | 285 |
| MspR9I | CCNGG | 2 cut(s) | 158, 286 |
| MvaI | CCWGG | 1 cut(s) | 158 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 162, 210 |
| NciI | CCSGG | 1 cut(s) | 286 |
| NdeII | GATC | 2 cut(s) | 42, 80 |
| NmuCI | GTSAC | 1 cut(s) | 127 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 69 |
| PfeI | GAWTC | 3 cut(s) | 88, 123, 295 |
| PkrI | GCNGC | 1 cut(s) | 155 |
| Psp6I | CCWGG | 1 cut(s) | 156 |
| PspGI | CCWGG | 1 cut(s) | 156 |
| SatI | GCNGC | 1 cut(s) | 154 |
| Sau3AI | GATC | 2 cut(s) | 42, 80 |
| ScrFI | CCNGG | 2 cut(s) | 158, 286 |
| SetI | ASST | 7 cut(s) | 98, 134, 151, 199, 225, 259, 279 |
| SfaNI | GCATC | 1 cut(s) | 55 |
| Sse9I | AATT | 1 cut(s) | 303 |
| SsiI | CCGC | 4 cut(s) | 165, 192, 204, 231 |
| StyD4I | CCNGG | 2 cut(s) | 156, 284 |
| TaaI | ACNGT | 4 cut(s) | 113, 176, 268, 292 |
| TaqI | TCGA | 4 cut(s) | 18, 72, 86, 91 |
| TasI | AATT | 1 cut(s) | 303 |
| TfiI | GAWTC | 3 cut(s) | 88, 123, 295 |
| TseFI | GTSAC | 1 cut(s) | 127 |
| TseI | GCWGC | 1 cut(s) | 153 |
| Tsp45I | GTSAC | 1 cut(s) | 127 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 218 |