RchiOBHm_Chr2g0103591

Respiratory burst oxidase homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0022658
Physical Location & Seq
Forward (+)
15065531 .. 15066988
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1005 bp
ATGACTAAATCATTCAGACCCAAGAACCTGCTTCGAAGACTAAATCGTTCACTTCAGTGTCTCATACTAGACAATTGGCAGCGTGGTTGGATTTTATTACTGTGGATTGTTGCCATGGCTTCACTTTTTGCCTGGAAATTCTACCAATACAGAAACAAAGCAGCATTTGAAGTCATCGGCTATTGCTTGGCAGTAACCAAAGGAGCTGCAGAAACTTTGAAGCTTAACATGGCCCTCATCCTTTTACCTGTTTGTCGTAACACACTGACACGGCTTCGATCAACACAAGCTAGGTCCTTCATTCCCTTTGATGACAACATTAATTTCCACAAGCCAATATCCTCTGATTTCCATGGCAAAAACCCGACGTACAAATTCTTATTCACTGGACCAGAAGGCTTGACTGGAATTCTGATGGTGATTTTTATGGCCATCTCATTCTCACTAGCAGCGAGTCACTTTCGAAGGAACATGGTGAGGCTTCCTGCCCCCTTTAACAAACTGACTGGGTTTAATGCGTTCTGGTATTCTCATCATCTGCTAGGTCTGGTCTACGTTTTGCTACTCATCCATGGAAGCTGTTTGTACTTTGTCCACGAGTGGTATCAGAAAACGACATGGATGTACATCTCTGTTCCATTTCTGCTGTATGTAGCAGAGCGCAGTATCCGAACATGTAGATCAAAACACTATTCAGGTAAGATACTAAAGGCTACAATCTTACCCAGAAATGTTATCAGCTTAATCATGTCCAAGCCACCTGGATTTAAGTACAGAAGTGGGCAATGCATATTTCTACAATGCCCAACAATCTCCCCATTTGAATGGCACCCATTTTCCATCACCTCAGCACCTGGGGATGAGCATCTGAGTGTTCATGTCCGAACAGTTGGAGAGTGGACGCAAGAATTGAAGCAAGCCATTTCTGAGGGAGATCATTCATTATCCTTGGTTCATCAAACATTCAATCTAGTGTTGCTCAGCCACAAGATATGGATCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04626 map04016 map04626
Pfam Domains
Protein Families
FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

334

Amino Acids

38.65

Weight (kDa)

9.95

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_8 PF08022 232 - 312 1.2e-24 FAD-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022658)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0103591
rosa_multiflora Rmu_sc0001530.1_g000017 Rmu_sc0001852.1_g000013
rosa_rugosa Rorug02G0116200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 36
AccB1I GGYRCC 1 cut(s) 828
AccI GTMKAC 1 cut(s) 552
AclWI GGATC 1 cut(s) 1004
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 3 cut(s) 137, 374, 408
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 4 cut(s) 371, 587, 626, 773
AflIII ACRYGT 1 cut(s) 674
AgsI TTSAA 5 cut(s) 170, 220, 824, 913, 967
AjnI CCWGG 3 cut(s) 131, 760, 853
AleI CACNNNNGTG 1 cut(s) 55
AluBI AGCT 5 cut(s) 206, 223, 290, 579, 741
AluI AGCT 5 cut(s) 206, 223, 290, 579, 741
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 1 cut(s) 1004
AlwNI CAGNNNCTG 1 cut(s) 854
AoxI GGCC 2 cut(s) 231, 429
ApeKI GCWGC 4 cut(s) 79, 161, 206, 449
ApoI RAATTY 3 cut(s) 137, 374, 408
AseI ATTAAT 1 cut(s) 321
AspLEI GCGC 1 cut(s) 663
AspS9I GGNCC 3 cut(s) 232, 294, 389
AsuHPI GGTGA 3 cut(s) 430, 487, 835
AsuII TTCGAA 2 cut(s) 34, 463
AvaII GGWCC 2 cut(s) 294, 389
BalI TGGCCA 1 cut(s) 431
BanI GGYRCC 1 cut(s) 828
BauI CACGAG 1 cut(s) 596
BbsI GAAGAC 1 cut(s) 43
BbvCI CCTCAGC 1 cut(s) 847
BbvI GCAGC 4 cut(s) 91, 173, 193, 461
BccI CCATC 3 cut(s) 409, 440, 848
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 3 cut(s) 133, 762, 855
BciVI GTATCC 1 cut(s) 677
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 5 cut(s) 68, 291, 446, 542, 971
BfmI CTRYAG 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 36
BfuI GTATCC 1 cut(s) 677
BisI GCNGC 4 cut(s) 80, 162, 207, 450
BlpI GCTNAGC 1 cut(s) 980
BlsI GCNGC 4 cut(s) 81, 163, 208, 451
Bme1390I CCNGG 3 cut(s) 133, 762, 855
Bme18I GGWCC 2 cut(s) 294, 389
BmgT120I GGNCC 3 cut(s) 232, 294, 389
BmiI GGNNCC 1 cut(s) 830
BmrFI CCNGG 3 cut(s) 133, 762, 855
BmrI ACTGGG 1 cut(s) 516
BmsI GCATC 1 cut(s) 874
BmuI ACTGGG 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 847
Bpu1102I GCTNAGC 1 cut(s) 980
Bpu14I TTCGAA 2 cut(s) 34, 463
BsaBI GATNNNNATC 3 cut(s) 626, 864, 995
BsaJI CCNNGG 5 cut(s) 114, 352, 571, 854, 948
Bse1I ACTGG 3 cut(s) 391, 409, 511
Bse3DI GCAATG 1 cut(s) 791
Bse8I GATNNNNATC 3 cut(s) 626, 864, 995
BseBI CCWGG 3 cut(s) 133, 762, 855
BseDI CCNNGG 5 cut(s) 114, 352, 571, 854, 948
BseGI GGATG 4 cut(s) 237, 567, 627, 865
BseJI GATNNNNATC 3 cut(s) 626, 864, 995
BseMI GCAATG 1 cut(s) 791
BseMII CTCAG 4 cut(s) 860, 861, 918, 994
BseNI ACTGG 3 cut(s) 391, 409, 511
BseXI GCAGC 4 cut(s) 91, 173, 193, 461
BshFI GGCC 2 cut(s) 233, 431
BshNI GGYRCC 1 cut(s) 828
BsmAI GTCTC 1 cut(s) 65
BsnI GGCC 2 cut(s) 233, 431
Bsp119I TTCGAA 2 cut(s) 34, 463
Bsp1407I TGTACA 1 cut(s) 624
Bsp143I GATC 4 cut(s) 278, 680, 934, 996
Bsp1720I GCTNAGC 1 cut(s) 980
Bsp19I CCATGG 3 cut(s) 114, 352, 571
BspANI GGCC 2 cut(s) 233, 431
BspCNI CTCAG 4 cut(s) 860, 861, 919, 993
BspLI GGNNCC 1 cut(s) 830
BspMAI CTGCAG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 36
BspPI GGATC 1 cut(s) 1004
BspT104I TTCGAA 2 cut(s) 34, 463
BspT107I GGYRCC 1 cut(s) 828
BsrDI GCAATG 1 cut(s) 791
BsrGI TGTACA 1 cut(s) 624
BsrI ACTGG 3 cut(s) 391, 409, 511
BssECI CCNNGG 5 cut(s) 114, 352, 571, 854, 948
BssMI GATC 4 cut(s) 278, 680, 934, 996
BssSI CACGAG 1 cut(s) 596
BssT1I CCWWGG 4 cut(s) 114, 352, 571, 948
Bst2BI CACGAG 1 cut(s) 596
Bst2UI CCWGG 3 cut(s) 133, 762, 855
Bst4CI ACNGT 2 cut(s) 102, 889
BstAUI TGTACA 1 cut(s) 624
BstBI TTCGAA 2 cut(s) 34, 463
BstC8I GCNNGC 1 cut(s) 918
BstDEI CTNAG 4 cut(s) 847, 869, 927, 980
BstDSI CCRYGG 3 cut(s) 114, 352, 571
BstF5I GGATG 4 cut(s) 237, 567, 627, 865
BstHHI GCGC 1 cut(s) 663
BstKTI GATC 4 cut(s) 281, 683, 937, 999
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 4 cut(s) 278, 680, 934, 996
BstNI CCWGG 3 cut(s) 133, 762, 855
BstNSI RCATGY 1 cut(s) 678
BstSCI CCNGG 3 cut(s) 131, 760, 853
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 4 cut(s) 91, 173, 193, 461
BstV2I GAAGAC 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 825
BsuI GTATCC 1 cut(s) 677
BsuRI GGCC 2 cut(s) 233, 431
BtgI CCRYGG 3 cut(s) 114, 352, 571
BtsCI GGATG 4 cut(s) 237, 567, 627, 865
BtsIMutI CAGTG 3 cut(s) 62, 263, 384
BveI ACCTGC 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 918
CaiI CAGNNNCTG 1 cut(s) 854
CfoI GCGC 1 cut(s) 663
Cfr13I GGNCC 3 cut(s) 232, 294, 389
CseI GACGC 1 cut(s) 910
Csp6I GTAC 4 cut(s) 370, 586, 625, 772
CviAII CATG 9 cut(s) 115, 229, 353, 472, 572, 618, 675, 748, 878
CviQI GTAC 4 cut(s) 370, 586, 625, 772
DdeI CTNAG 4 cut(s) 847, 869, 927, 980
DpnI GATC 4 cut(s) 280, 682, 936, 998
DpnII GATC 4 cut(s) 278, 680, 934, 996
EaeI YGGCCR 1 cut(s) 429
Eco130I CCWWGG 4 cut(s) 114, 352, 571, 948
Eco47I GGWCC 2 cut(s) 294, 389
Eco57I CTGAAG 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 294
EcoRI GAATTC 1 cut(s) 408
EcoRII CCWGG 3 cut(s) 131, 760, 853
EcoT14I CCWWGG 4 cut(s) 114, 352, 571, 948
EcoT22I ATGCAT 1 cut(s) 791
ErhI CCWWGG 4 cut(s) 114, 352, 571, 948
FaeI CATG 9 cut(s) 118, 232, 356, 475, 575, 621, 678, 751, 881
FatI CATG 9 cut(s) 114, 228, 352, 471, 571, 617, 674, 747, 877
FblI GTMKAC 1 cut(s) 552
Fnu4HI GCNGC 4 cut(s) 80, 162, 207, 450
FokI GGATG 4 cut(s) 224, 554, 634, 872
Fsp4HI GCNGC 4 cut(s) 80, 162, 207, 450
FspBI CTAG 5 cut(s) 68, 291, 446, 542, 971
GlaI GCGC 1 cut(s) 662
GluI GCNGC 4 cut(s) 80, 162, 207, 450
HaeIII GGCC 2 cut(s) 233, 431
HgaI GACGC 1 cut(s) 910
HhaI GCGC 1 cut(s) 663
Hin1II CATG 9 cut(s) 118, 232, 356, 475, 575, 621, 678, 751, 881
Hin6I GCGC 1 cut(s) 661
HinP1I GCGC 1 cut(s) 661
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 454
HphI GGTGA 3 cut(s) 430, 487, 835
Hpy166II GTNNAC 4 cut(s) 50, 553, 595, 900
Hpy188I TCNGA 8 cut(s) 17, 346, 414, 609, 671, 870, 884, 928
Hpy8I GTNNAC 4 cut(s) 50, 553, 595, 900
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 3 cut(s) 307, 389, 459
HpyCH4III ACNGT 2 cut(s) 102, 889
HpyCH4IV ACGT 2 cut(s) 368, 555
HpyCH4V TGCA 2 cut(s) 209, 789
HpyF3I CTNAG 4 cut(s) 847, 869, 927, 980
HpySE526I ACGT 2 cut(s) 368, 555
Hsp92II CATG 9 cut(s) 118, 232, 356, 475, 575, 621, 678, 751, 881
HspAI GCGC 1 cut(s) 661
Kzo9I GATC 4 cut(s) 278, 680, 934, 996
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 4 cut(s) 91, 173, 193, 461
LweI GCATC 1 cut(s) 874
MaeI CTAG 5 cut(s) 68, 291, 446, 542, 971
MaeII ACGT 2 cut(s) 368, 555
MaeIII GTNAC 3 cut(s) 193, 257, 455
MalI GATC 4 cut(s) 280, 682, 936, 998
MboI GATC 4 cut(s) 278, 680, 934, 996
MboII GAAGA 1 cut(s) 48
MfeI CAATTG 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 431
MluCI AATT 6 cut(s) 73, 137, 322, 374, 408, 908
MluNI TGGCCA 1 cut(s) 431
MlyI GAGTC 1 cut(s) 463
MmeI TCCRAC 2 cut(s) 68, 871
MnlI CCTC 5 cut(s) 245, 352, 471, 856, 922
Mox20I TGGCCA 1 cut(s) 431
Mph1103I ATGCAT 1 cut(s) 791
MscI TGGCCA 1 cut(s) 431
MseI TTAA 6 cut(s) 225, 321, 495, 513, 743, 768
MslI CAYNNNNRTG 3 cut(s) 55, 823, 870
Msp20I TGGCCA 1 cut(s) 431
MspR9I CCNGG 3 cut(s) 133, 762, 855
MunI CAATTG 1 cut(s) 73
MvaI CCWGG 3 cut(s) 133, 762, 855
NcoI CCATGG 3 cut(s) 114, 352, 571
NdeII GATC 4 cut(s) 278, 680, 934, 996
NlaIII CATG 9 cut(s) 118, 232, 356, 475, 575, 621, 678, 751, 881
NlaIV GGNNCC 1 cut(s) 830
NmuCI GTSAC 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 791
NspI RCATGY 1 cut(s) 678
NspV TTCGAA 2 cut(s) 34, 463
OliI CACNNNNGTG 1 cut(s) 55
PciI ACATGT 1 cut(s) 674
PkrI GCNGC 4 cut(s) 81, 163, 208, 451
PleI GAGTC 1 cut(s) 462
PpsI GAGTC 1 cut(s) 462
PpuMI RGGWCCY 1 cut(s) 294
PscI ACATGT 1 cut(s) 674
PshBI ATTAAT 1 cut(s) 321
Psp5II RGGWCCY 1 cut(s) 294
Psp6I CCWGG 3 cut(s) 131, 760, 853
PspGI CCWGG 3 cut(s) 131, 760, 853
PspN4I GGNNCC 1 cut(s) 830
PspPI GGNCC 3 cut(s) 232, 294, 389
PspPPI RGGWCCY 1 cut(s) 294
PstI CTGCAG 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 854
RsaI GTAC 4 cut(s) 371, 587, 626, 773
RsaNI GTAC 4 cut(s) 370, 586, 625, 772
RseI CAYNNNNRTG 3 cut(s) 55, 823, 870
SaqAI TTAA 6 cut(s) 225, 321, 495, 513, 743, 768
SatI GCNGC 4 cut(s) 80, 162, 207, 450
Sau3AI GATC 4 cut(s) 278, 680, 934, 996
Sau96I GGNCC 3 cut(s) 232, 294, 389
SchI GAGTC 1 cut(s) 463
ScrFI CCNGG 3 cut(s) 133, 762, 855
SfaNI GCATC 1 cut(s) 874
SfcI CTRYAG 1 cut(s) 207
SfuI TTCGAA 2 cut(s) 34, 463
SinI GGWCC 2 cut(s) 294, 389
SmiMI CAYNNNNRTG 3 cut(s) 55, 823, 870
Sse9I AATT 6 cut(s) 73, 137, 322, 374, 408, 908
SspMI CTAG 5 cut(s) 68, 291, 446, 542, 971
StyD4I CCNGG 3 cut(s) 131, 760, 853
StyI CCWWGG 4 cut(s) 114, 352, 571, 948
TaaI ACNGT 2 cut(s) 102, 889
TaiI ACGT 2 cut(s) 371, 558
TaqI TCGA 3 cut(s) 34, 277, 463
TasI AATT 6 cut(s) 73, 137, 322, 374, 408, 908
TatI WGTACW 3 cut(s) 585, 624, 771
Tru1I TTAA 6 cut(s) 225, 321, 495, 513, 743, 768
Tru9I TTAA 6 cut(s) 225, 321, 495, 513, 743, 768
TscAI CASTG 3 cut(s) 62, 270, 391
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 4 cut(s) 79, 161, 206, 449
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 4 cut(s) 289, 866, 930, 944
TspRI CASTG 3 cut(s) 62, 270, 391
VpaK11BI GGWCC 2 cut(s) 294, 389
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 3 cut(s) 137, 374, 408
XceI RCATGY 1 cut(s) 678
XmiI GTMKAC 1 cut(s) 552
XspI CTAG 5 cut(s) 68, 291, 446, 542, 971
Zsp2I ATGCAT 1 cut(s) 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.