Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001530.1

Orthogroup ID

OG0022658

Physical Location & Seq

Genomic Coordinates Forward (+)

46340 .. 48706

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001530.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atggcttcactttttgcctggaaattctaccaatacagaaacaaagcagcatttgaagtcatcggctattgcttgccagtagccgaaggagctggaggaactttgaagcttaacatggccctcatccttttacctgtttgtcgtaacacactgacatggcttcgatcaacacaagctaggtccttcattccctttgatgacaacattaatttccacaagatgattgcatttgctatagcaattggaataattgttcatgctgggaaccatgtggcatgtgactttcctcgtctagtaaactcatctgcggaagaatttgagccaatatcctctgatttccatggcaaaaacccgacgtacaaattcttattcactggaccagaaggcttgactggaattctgatggtgatttttatggccatctcattcacactagcagcgagtcactttcgaaggaacatggtgaggcttcctgcccccttgaacaaactgactgggtttaatgcgttctggtattcttatcatctgctaggtctggtctacgttttgctactcatccatggaagcggcacccattttccatcacctcagcacctggggatgagcatcttgagtgttcatatccgaacagttggagactggacgcaagaattgaagcgagccatttctgagggagatcattcattatctttagttcatcggactagtgttgctctgccacaagatacggatcaaataagactatgcagccaacccaaattgttttttgatggtccatatggtgatatggggcaacggcacaggtctacagcaactatgatgtcatactccttgtgggtcttggcattggagctgccccttttagaacctggctctttcgagtggtttaagggagtcatggatgaagtggcagaaatggatcacaaagatcagattgaacttcacaactaccgtacgagtgtctacgaagagggtgatgcaaggtcaactctaatcaccatggtccaagctctcaaccatgccaaacatggagttgacatcctatctggcaccagagtaatgactcattttgcaagaccttattggaaagaagtgtttaccaagatagcttccaagcatccattttcgacagtaggggtattctactgtgggatgcccatgttggcaaaggagctgaagatgctatcacttgagctcagtcacaagacatcgacacgctttgaattccacaaggagtacttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

414

Amino Acids

46.92

Weight (kDa)

8.2

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022658)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0103591
rosa_multiflora	Rmu_sc0001530.1_g000017 Rmu_sc0001852.1_g000013
rosa_rugosa	Rorug02G0116200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	569, 1049
AccI	GTMKAC	3 cut(s)	540, 806, 963
AciI	CCGC	2 cut(s)	308, 567
AclWI	GGATC	2 cut(s)	738, 927
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	5 cut(s)	23, 314, 362, 396, 1223
AcuI	CTGAAG	1 cut(s)	1196
AfaI	GTAC	3 cut(s)	359, 955, 1238
AgsI	TTSAA	6 cut(s)	56, 106, 484, 655, 938, 1223
AhlI	ACTAGT	1 cut(s)	704
AjnI	CCWGG	3 cut(s)	17, 594, 868
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	8 cut(s)	92, 109, 176, 853, 1010, 1109, 1174, 1195
AluI	AGCT	8 cut(s)	92, 109, 176, 853, 1010, 1109, 1174, 1195
Alw21I	GWGCWC	1 cut(s)	1197
Alw26I	GTCTC	1 cut(s)	630
AlwI	GGATC	2 cut(s)	738, 927
AlwNI	CAGNNNCTG	1 cut(s)	595
AoxI	GGCC	2 cut(s)	117, 417
ApeKI	GCWGC	4 cut(s)	47, 437, 747, 853
ApoI	RAATTY	5 cut(s)	23, 314, 362, 396, 1223
AseI	ATTAAT	1 cut(s)	207
AspS9I	GGNCC	5 cut(s)	118, 180, 377, 773, 1003
AsuHPI	GGTGA	6 cut(s)	418, 475, 576, 794, 986, 988
AsuII	TTCGAA	1 cut(s)	451
AvaII	GGWCC	4 cut(s)	180, 377, 773, 1003
BalI	TGGCCA	1 cut(s)	419
BanI	GGYRCC	2 cut(s)	569, 1049
BanII	GRGCYC	1 cut(s)	1197
Bbv12I	GWGCWC	1 cut(s)	1197
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	4 cut(s)	59, 449, 759, 840
BccI	CCATC	4 cut(s)	397, 428, 589, 764
BceAI	ACGGC	1 cut(s)	812
BciT130I	CCWGG	3 cut(s)	19, 596, 870
BcoDI	GTCTC	1 cut(s)	630
BcuI	ACTAGT	1 cut(s)	704
BfaI	CTAG	5 cut(s)	177, 293, 434, 530, 705
BfmI	CTRYAG	2 cut(s)	234, 807
BisI	GCNGC	5 cut(s)	48, 438, 568, 748, 854
BlsI	GCNGC	5 cut(s)	49, 439, 569, 749, 855
BmcAI	AGTACT	1 cut(s)	1238
Bme1390I	CCNGG	3 cut(s)	19, 596, 870
Bme18I	GGWCC	4 cut(s)	180, 377, 773, 1003
BmgT120I	GGNCC	5 cut(s)	118, 180, 377, 773, 1003
BmiI	GGNNCC	3 cut(s)	266, 571, 1051
BmrFI	CCNGG	3 cut(s)	19, 596, 870
BmrI	ACTGGG	1 cut(s)	504
BmsI	GCATC	5 cut(s)	615, 967, 1126, 1143, 1170
BmuI	ACTGGG	1 cut(s)	504
BpmI	CTGGAG	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	451
BpuEI	CTTGAG	2 cut(s)	631, 1211
BsaBI	GATNNNNATC	2 cut(s)	605, 729
BsaJI	CCNNGG	4 cut(s)	340, 559, 595, 999
Bse1I	ACTGG	5 cut(s)	77, 379, 397, 499, 644
Bse8I	GATNNNNATC	2 cut(s)	605, 729
BseBI	CCWGG	3 cut(s)	19, 596, 870
BseDI	CCNNGG	4 cut(s)	340, 559, 595, 999
BseGI	GGATG	7 cut(s)	123, 555, 606, 907, 1038, 1117, 1158
BseJI	GATNNNNATC	2 cut(s)	605, 729
BseMII	CTCAG	3 cut(s)	602, 660, 1210
BseNI	ACTGG	5 cut(s)	77, 379, 397, 499, 644
BseXI	GCAGC	4 cut(s)	59, 449, 759, 840
BseYI	CCCAGC	1 cut(s)	260
BshFI	GGCC	2 cut(s)	119, 419
BshNI	GGYRCC	2 cut(s)	569, 1049
BsiHKAI	GWGCWC	1 cut(s)	1197
BsiWI	CGTACG	1 cut(s)	953
BsmAI	GTCTC	1 cut(s)	630
BsnI	GGCC	2 cut(s)	119, 419
Bsp119I	TTCGAA	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	1197
Bsp143I	GATC	5 cut(s)	164, 676, 730, 919, 928
Bsp19I	CCATGG	3 cut(s)	340, 559, 999
BspACI	CCGC	2 cut(s)	308, 567
BspANI	GGCC	2 cut(s)	119, 419
BspCNI	CTCAG	3 cut(s)	601, 661, 1209
BspLI	GGNNCC	3 cut(s)	266, 571, 1051
BspPI	GGATC	2 cut(s)	738, 927
BspT104I	TTCGAA	1 cut(s)	451
BspT107I	GGYRCC	2 cut(s)	569, 1049
BsrI	ACTGG	5 cut(s)	77, 379, 397, 499, 644
BssECI	CCNNGG	4 cut(s)	340, 559, 595, 999
BssMI	GATC	5 cut(s)	164, 676, 730, 919, 928
BssT1I	CCWWGG	3 cut(s)	340, 559, 999
Bst2UI	CCWGG	3 cut(s)	19, 596, 870
Bst4CI	ACNGT	4 cut(s)	631, 953, 1132, 1148
Bst6I	CTCTTC	1 cut(s)	963
BstBI	TTCGAA	1 cut(s)	451
BstC8I	GCNNGC	2 cut(s)	74, 660
BstDEI	CTNAG	3 cut(s)	588, 669, 1196
BstDSI	CCRYGG	3 cut(s)	340, 559, 999
BstF5I	GGATG	7 cut(s)	123, 555, 606, 907, 1038, 1117, 1158
BstKTI	GATC	5 cut(s)	167, 679, 733, 922, 931
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	5 cut(s)	164, 676, 730, 919, 928
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 1180
BstNI	CCWGG	3 cut(s)	19, 596, 870
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	3 cut(s)	17, 594, 868
BstSFI	CTRYAG	2 cut(s)	234, 807
BstV1I	GCAGC	4 cut(s)	59, 449, 759, 840
BsuRI	GGCC	2 cut(s)	119, 419
BtgI	CCRYGG	3 cut(s)	340, 559, 999
BtsCI	GGATG	7 cut(s)	123, 555, 606, 907, 1038, 1117, 1158
BtsIMutI	CAGTG	2 cut(s)	149, 372
Cac8I	GCNNGC	2 cut(s)	74, 660
CaiI	CAGNNNCTG	1 cut(s)	595
Cfr13I	GGNCC	5 cut(s)	118, 180, 377, 773, 1003
CseI	GACGC	1 cut(s)	652
Csp6I	GTAC	3 cut(s)	358, 954, 1237
CviQI	GTAC	3 cut(s)	358, 954, 1237
DdeI	CTNAG	3 cut(s)	588, 669, 1196
DpnI	GATC	5 cut(s)	166, 678, 732, 921, 930
DpnII	GATC	5 cut(s)	164, 676, 730, 919, 928
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	963
EarI	CTCTTC	1 cut(s)	963
Ecl136II	GAGCTC	1 cut(s)	1195
Eco130I	CCWWGG	3 cut(s)	340, 559, 999
Eco24I	GRGCYC	1 cut(s)	1197
Eco47I	GGWCC	4 cut(s)	180, 377, 773, 1003
Eco53kI	GAGCTC	1 cut(s)	1195
Eco57I	CTGAAG	1 cut(s)	1196
EcoICRI	GAGCTC	1 cut(s)	1195
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRI	GAATTC	2 cut(s)	396, 1223
EcoRII	CCWGG	3 cut(s)	17, 594, 868
EcoT14I	CCWWGG	3 cut(s)	340, 559, 999
EcoT38I	GRGCYC	1 cut(s)	1197
ErhI	CCWWGG	3 cut(s)	340, 559, 999
FalI	AAGNNNNNCTT	1 cut(s)	1223
FauNDI	CATATG	1 cut(s)	778
FblI	GTMKAC	3 cut(s)	540, 806, 963
Fnu4HI	GCNGC	5 cut(s)	48, 438, 568, 748, 854
FokI	GGATG	7 cut(s)	110, 542, 613, 914, 1025, 1104, 1165
FriOI	GRGCYC	1 cut(s)	1197
Fsp4HI	GCNGC	5 cut(s)	48, 438, 568, 748, 854
FspBI	CTAG	5 cut(s)	177, 293, 434, 530, 705
GluI	GCNGC	5 cut(s)	48, 438, 568, 748, 854
GsaI	CCCAGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	119, 419
HgaI	GACGC	1 cut(s)	652
HincII	GTYRAC	2 cut(s)	987, 1036
HindII	GTYRAC	2 cut(s)	987, 1036
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	3 cut(s)	442, 894, 1063
HphI	GGTGA	6 cut(s)	418, 475, 576, 794, 986, 988
Hpy166II	GTNNAC	7 cut(s)	298, 541, 807, 964, 987, 1036, 1098
Hpy188I	TCNGA	6 cut(s)	334, 402, 626, 670, 702, 933
Hpy188III	TCNNGA	1 cut(s)	610
Hpy8I	GTNNAC	7 cut(s)	298, 541, 807, 964, 987, 1036, 1098
Hpy99I	CGWCG	1 cut(s)	358
HpyAV	CCTTC	4 cut(s)	80, 193, 377, 447
HpyCH4III	ACNGT	4 cut(s)	631, 953, 1132, 1148
HpyCH4IV	ACGT	2 cut(s)	356, 543
HpyCH4V	TGCA	4 cut(s)	227, 747, 980, 1073
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 1180
HpyF3I	CTNAG	3 cut(s)	588, 669, 1196
HpySE526I	ACGT	2 cut(s)	356, 543
Kzo9I	GATC	5 cut(s)	164, 676, 730, 919, 928
LmnI	GCTCC	3 cut(s)	89, 850, 1171
Lsp1109I	GCAGC	4 cut(s)	59, 449, 759, 840
LweI	GCATC	5 cut(s)	615, 967, 1126, 1143, 1170
MaeI	CTAG	5 cut(s)	177, 293, 434, 530, 705
MaeII	ACGT	2 cut(s)	356, 543
MaeIII	GTNAC	4 cut(s)	143, 278, 443, 1199
MalI	GATC	5 cut(s)	166, 678, 732, 921, 930
MboI	GATC	5 cut(s)	164, 676, 730, 919, 928
MboII	GAAGA	3 cut(s)	323, 980, 1189
MfeI	CAATTG	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	1197
MlsI	TGGCCA	1 cut(s)	419
MluNI	TGGCCA	1 cut(s)	419
MlyI	GAGTC	3 cut(s)	451, 903, 1057
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	8 cut(s)	89, 131, 297, 340, 459, 597, 664, 964
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	5 cut(s)	111, 207, 501, 888, 1243
MslI	CAYNNNNRTG	1 cut(s)	154
Msp20I	TGGCCA	1 cut(s)	419
MspR9I	CCNGG	3 cut(s)	19, 596, 870
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	3 cut(s)	19, 596, 870
MwoI	GCNNNNNNNGC	2 cut(s)	89, 1180
NcoI	CCATGG	3 cut(s)	340, 559, 999
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	5 cut(s)	164, 676, 730, 919, 928
NlaIV	GGNNCC	3 cut(s)	266, 571, 1051
NmuCI	GTSAC	3 cut(s)	278, 443, 1199
NspI	RCATGY	1 cut(s)	279
NspV	TTCGAA	1 cut(s)	451
Pfl23II	CGTACG	1 cut(s)	953
PkrI	GCNGC	5 cut(s)	49, 439, 569, 749, 855
PleI	GAGTC	3 cut(s)	450, 902, 1057
PpsI	GAGTC	3 cut(s)	450, 902, 1057
PpuMI	RGGWCCY	1 cut(s)	180
PshBI	ATTAAT	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	1197
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	3 cut(s)	17, 594, 868
PspFI	CCCAGC	1 cut(s)	260
PspGI	CCWGG	3 cut(s)	17, 594, 868
PspLI	CGTACG	1 cut(s)	953
PspN4I	GGNNCC	3 cut(s)	266, 571, 1051
PspPI	GGNCC	5 cut(s)	118, 180, 377, 773, 1003
PspPPI	RGGWCCY	1 cut(s)	180
PstNI	CAGNNNCTG	1 cut(s)	595
RsaI	GTAC	3 cut(s)	359, 955, 1238
RsaNI	GTAC	3 cut(s)	358, 954, 1237
RseI	CAYNNNNRTG	1 cut(s)	154
SacI	GAGCTC	1 cut(s)	1197
SaqAI	TTAA	5 cut(s)	111, 207, 501, 888, 1243
SatI	GCNGC	5 cut(s)	48, 438, 568, 748, 854
Sau3AI	GATC	5 cut(s)	164, 676, 730, 919, 928
Sau96I	GGNCC	5 cut(s)	118, 180, 377, 773, 1003
ScaI	AGTACT	1 cut(s)	1238
SchI	GAGTC	3 cut(s)	451, 903, 1057
ScrFI	CCNGG	3 cut(s)	19, 596, 870
SduI	GDGCHC	1 cut(s)	1197
SfaNI	GCATC	5 cut(s)	615, 967, 1126, 1143, 1170
SfcI	CTRYAG	2 cut(s)	234, 807
SfuI	TTCGAA	1 cut(s)	451
SinI	GGWCC	4 cut(s)	180, 377, 773, 1003
SmiMI	CAYNNNNRTG	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	610, 1190
SmoI	CTYRAG	2 cut(s)	610, 1190
SpeI	ACTAGT	1 cut(s)	704
SsiI	CCGC	2 cut(s)	308, 567
SspMI	CTAG	5 cut(s)	177, 293, 434, 530, 705
SstI	GAGCTC	1 cut(s)	1197
StyD4I	CCNGG	3 cut(s)	17, 594, 868
StyI	CCWWGG	3 cut(s)	340, 559, 999
TaaI	ACNGT	4 cut(s)	631, 953, 1132, 1148
TaiI	ACGT	2 cut(s)	359, 546
TaqI	TCGA	5 cut(s)	163, 451, 879, 1127, 1211
TatI	WGTACW	1 cut(s)	1236
TauI	GCSGC	1 cut(s)	570
Tru1I	TTAA	5 cut(s)	111, 207, 501, 888, 1243
Tru9I	TTAA	5 cut(s)	111, 207, 501, 888, 1243
TscAI	CASTG	2 cut(s)	156, 379
TseFI	GTSAC	3 cut(s)	278, 443, 1199
TseI	GCWGC	4 cut(s)	47, 437, 747, 853
Tsp45I	GTSAC	3 cut(s)	278, 443, 1199
TspDTI	ATGAA	6 cut(s)	175, 245, 608, 672, 686, 918
TspGWI	ACGGA	1 cut(s)	743
TspRI	CASTG	2 cut(s)	156, 379
VpaK11BI	GGWCC	4 cut(s)	180, 377, 773, 1003
VspI	ATTAAT	1 cut(s)	207
XapI	RAATTY	5 cut(s)	23, 314, 362, 396, 1223
XceI	RCATGY	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1025
XmiI	GTMKAC	3 cut(s)	540, 806, 963
XspI	CTAG	5 cut(s)	177, 293, 434, 530, 705
ZrmI	AGTACT	1 cut(s)	1238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.