Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021889

Physical Location & Seq

Genomic Coordinates Reverse (-)

18286846 .. 18287764

Gene Structure 919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCAGAAGCTTCCAAAGTTGCTGAGATAAAGAGAACTGGTAAAACAGGAAATGAGGCAGCAACTAAAATACTGGCCAAGCAGCTAATCAGGCTTAGGCAACATATATCTAACTTGCAAGGAAGTAGGGCTCAAATGAGAGCAATAACAACTCATACACAGGCAATGCACGCCCAGTCATCAGTTGTTGTTGGCATGAAAGGTGCTACAAAAGCTCCTGCAAAGCAAGCAAAGGTGATACGTGAATTTCAGAAACAGTCTACACATATTGTTATGACTGTAAATGGAATTCATAATTCAGTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

102

Amino Acids

11.1

Weight (kDa)

11.46

Isoelectric Point (pI)

56.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	6 - 79	3.9e-12	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44560 AT5G44560
rosa_chinensis	RchiOBHm_Chr2g0106861
rosa_wichuraiana	Rw0G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	260
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	245, 288
AluBI	AGCT	3 cut(s)	11, 85, 215
AluI	AGCT	3 cut(s)	11, 85, 215
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	59, 82
ApoI	RAATTY	2 cut(s)	245, 288
AsuHPI	GGTGA	1 cut(s)	247
BalI	TGGCCA	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	133
BbvI	GCAGC	2 cut(s)	71, 94
BisI	GCNGC	2 cut(s)	60, 83
BlsI	GCNGC	2 cut(s)	61, 84
BmrI	ACTGGG	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	169
Bpu10I	CCTNAGC	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	242
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bse1I	ACTGG	3 cut(s)	43, 78, 175
Bse3DI	GCAATG	1 cut(s)	171
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	3 cut(s)	43, 78, 175
BseXI	GCAGC	2 cut(s)	71, 94
BshFI	GGCC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	133
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	3 cut(s)	43, 78, 175
Bst4CI	ACNGT	2 cut(s)	258, 280
BstBAI	YACGTR	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	171, 228
BstDEI	CTNAG	2 cut(s)	24, 95
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 170, 212, 227
BstV1I	GCAGC	2 cut(s)	71, 94
BsuRI	GGCC	1 cut(s)	77
Cac8I	GCNNGC	2 cut(s)	171, 228
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	6 cut(s)	11, 77, 85, 94, 131, 215
CviKI_1	RGCY	6 cut(s)	11, 77, 85, 94, 131, 215
DdeI	CTNAG	2 cut(s)	24, 95
EaeI	YGGCCR	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	133
FaeI	CATG	1 cut(s)	199
FaiI	YATR	7 cut(s)	105, 107, 156, 197, 267, 275, 294
FatI	CATG	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	2 cut(s)	60, 83
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	2 cut(s)	60, 83
GluI	GCNGC	2 cut(s)	60, 83
HaeIII	GGCC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	9
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	2 cut(s)	7, 252
Hpy8I	GTNNAC	1 cut(s)	261
HpyCH4III	ACNGT	2 cut(s)	258, 280
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	3 cut(s)	118, 169, 221
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 170, 212, 227
HpyF3I	CTNAG	2 cut(s)	24, 95
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	7 cut(s)	24, 33, 59, 76, 146, 188, 231
Lsp1109I	GCAGC	2 cut(s)	71, 94
MaeII	ACGT	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	133
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	3 cut(s)	245, 288, 295
MluNI	TGGCCA	1 cut(s)	77
MnlI	CCTC	1 cut(s)	49
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	77
MwoI	GCNNNNNNNGC	4 cut(s)	91, 170, 212, 227
NlaIII	CATG	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	61, 84
Ppu21I	YACGTR	1 cut(s)	242
SatI	GCNGC	2 cut(s)	60, 83
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	6 cut(s)	13, 87, 205, 217, 237, 244
Sse9I	AATT	3 cut(s)	245, 288, 295
TaaI	ACNGT	2 cut(s)	258, 280
TaiI	ACGT	1 cut(s)	244
TasI	AATT	3 cut(s)	245, 288, 295
TseI	GCWGC	2 cut(s)	59, 82
TspDTI	ATGAA	2 cut(s)	212, 281
XapI	RAATTY	2 cut(s)	245, 288
XmiI	GTMKAC	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.