Rw0G022100

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01024
OG0021889
Physical Location & Seq
Reverse (-)
4176 .. 5661
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G022100.1

Sequence Viewer

Length: 558 bp
ATAAAGAAGAAAATTGGAGCATTGCAATTAGAAAAAGTTGCTGAGATAAAGAGAACTACTAAAACAGGAAATGAGGCAGCATCTAAAATACTGGCCAAGCAGCTAATCAGGCTTAGGCAACATATATCTAACTTGCAAGGAAGTAGGGATAAAATTTATATCCTCTTGCAGGCAATGCACGCCCAGTCATCAATTGTTGTTGGCATGAAAGGTGTTAGTAAGGCAATGGCAGCTATGAATAAGCAAGCAAAGGTGATACATGAATTTCAGAAACAGTCTACACATATTGTTATGACTGTTAATGATGTTGTTCTTGCAGTGGATAATACACTTTTCCTATTCTTTAGATACCACCCTCCAGGTTTGTTATCCTTGACGTTTGTTGTTGGTTTTGTAACCTATACATTCTTTTTGAGCTGTTCCTGGTTCGTTATATATTTTGACTTATTTTTCATTGAATTGCACCAGACGATTTCATGTATATCAGAGGTGACCCATCTGTCTTATATGTACATTTTGACAGTGAATTGTTGTATTTACTTAAGAGTGCTGGGTTGA

Protein Analysis

185

Amino Acids

21.04

Weight (kDa)

9.58

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 9 - 85 4.3e-09 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021889)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44560 AT5G44560
rosa_chinensis RchiOBHm_Chr2g0106861
rosa_wichuraiana Rw0G022100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 499
AccI GTMKAC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 2 cut(s) 153, 263
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 1 cut(s) 169
AflII CTTAAG 1 cut(s) 541
AgsI TTSAA 1 cut(s) 458
AjnI CCWGG 2 cut(s) 358, 422
AluBI AGCT 3 cut(s) 103, 233, 417
AluI AGCT 3 cut(s) 103, 233, 417
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 3 cut(s) 77, 100, 230
ApoI RAATTY 2 cut(s) 153, 263
AsuHPI GGTGA 2 cut(s) 265, 502
BalI TGGCCA 1 cut(s) 95
BbvI GCAGC 3 cut(s) 89, 112, 242
BccI CCATC 1 cut(s) 504
BciT130I CCWGG 2 cut(s) 360, 424
BfrI CTTAAG 1 cut(s) 541
BisI GCNGC 3 cut(s) 78, 101, 231
BlsI GCNGC 3 cut(s) 79, 102, 232
Bme1390I CCNGG 2 cut(s) 360, 424
BmrFI CCNGG 2 cut(s) 360, 424
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 178
BpmI CTGGAG 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 2 cut(s) 96, 184
Bse3DI GCAATG 3 cut(s) 20, 180, 231
BseBI CCWGG 2 cut(s) 360, 424
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMI GCAATG 3 cut(s) 20, 180, 231
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 2 cut(s) 96, 184
BseXI GCAGC 3 cut(s) 89, 112, 242
BseYI CCCAGC 1 cut(s) 550
BshFI GGCC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 1 cut(s) 95
Bsp1407I TGTACA 1 cut(s) 510
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 34
BspTI CTTAAG 1 cut(s) 541
BsrDI GCAATG 3 cut(s) 20, 180, 231
BsrGI TGTACA 1 cut(s) 510
BsrI ACTGG 2 cut(s) 96, 184
Bst2UI CCWGG 2 cut(s) 360, 424
Bst4CI ACNGT 3 cut(s) 276, 298, 523
BstAFI CTTAAG 1 cut(s) 541
BstAPI GCANNNNNTGC 1 cut(s) 175
BstAUI TGTACA 1 cut(s) 510
BstC8I GCNNGC 3 cut(s) 171, 180, 246
BstDEI CTNAG 2 cut(s) 42, 113
BstEII GGTNACC 1 cut(s) 490
BstENI CCTNNNNNAGG 1 cut(s) 167
BstMWI GCNNNNNNNGC 4 cut(s) 109, 175, 179, 230
BstNI CCWGG 2 cut(s) 360, 424
BstPI GGTNACC 1 cut(s) 490
BstSCI CCNGG 2 cut(s) 358, 422
BstV1I GCAGC 3 cut(s) 89, 112, 242
BsuRI GGCC 1 cut(s) 95
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 324, 528
Cac8I GCNNGC 3 cut(s) 171, 180, 246
Csp6I GTAC 1 cut(s) 511
CviAII CATG 3 cut(s) 205, 260, 477
CviJI RGCY 5 cut(s) 95, 103, 112, 233, 417
CviKI_1 RGCY 5 cut(s) 95, 103, 112, 233, 417
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 2 cut(s) 42, 113
DrdI GACNNNNNNGTC 1 cut(s) 499
DseDI GACNNNNNNGTC 1 cut(s) 499
EaeI YGGCCR 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 490
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoO65I GGTNACC 1 cut(s) 490
EcoRII CCWGG 2 cut(s) 358, 422
FaeI CATG 3 cut(s) 208, 263, 480
FatI CATG 3 cut(s) 204, 259, 476
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 3 cut(s) 78, 101, 231
Fsp4HI GCNGC 3 cut(s) 78, 101, 231
GluI GCNGC 3 cut(s) 78, 101, 231
GsaI CCCAGC 1 cut(s) 554
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 1 cut(s) 95
Hin1II CATG 3 cut(s) 208, 263, 480
HphI GGTGA 2 cut(s) 265, 502
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 2 cut(s) 270, 487
Hpy8I GTNNAC 1 cut(s) 279
HpyCH4III ACNGT 3 cut(s) 276, 298, 523
HpyCH4IV ACGT 1 cut(s) 377
HpyCH4V TGCA 6 cut(s) 25, 136, 169, 178, 317, 463
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 175, 179, 230
HpyF3I CTNAG 2 cut(s) 42, 113
HpySE526I ACGT 1 cut(s) 377
Hsp92II CATG 3 cut(s) 208, 263, 480
LmnI GCTCC 1 cut(s) 17
Lsp1109I GCAGC 3 cut(s) 89, 112, 242
LweI GCATC 1 cut(s) 89
MaeII ACGT 1 cut(s) 377
MaeIII GTNAC 2 cut(s) 394, 490
MboII GAAGA 1 cut(s) 19
MfeI CAATTG 1 cut(s) 192
MlsI TGGCCA 1 cut(s) 95
MluCI AATT 7 cut(s) 12, 26, 153, 192, 263, 458, 526
MluNI TGGCCA 1 cut(s) 95
MnlI CCTC 4 cut(s) 67, 173, 366, 481
Mox20I TGGCCA 1 cut(s) 95
MscI TGGCCA 1 cut(s) 95
MseI TTAA 2 cut(s) 300, 542
Msp20I TGGCCA 1 cut(s) 95
MspCI CTTAAG 1 cut(s) 541
MspR9I CCNGG 2 cut(s) 360, 424
MunI CAATTG 1 cut(s) 192
MvaI CCWGG 2 cut(s) 360, 424
MwoI GCNNNNNNNGC 4 cut(s) 109, 175, 179, 230
NlaIII CATG 3 cut(s) 208, 263, 480
NmuCI GTSAC 1 cut(s) 490
PkrI GCNGC 3 cut(s) 79, 102, 232
Psp6I CCWGG 2 cut(s) 358, 422
PspEI GGTNACC 1 cut(s) 490
PspFI CCCAGC 1 cut(s) 550
PspGI CCWGG 2 cut(s) 358, 422
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
SaqAI TTAA 2 cut(s) 300, 542
SatI GCNGC 3 cut(s) 78, 101, 231
ScrFI CCNGG 2 cut(s) 360, 424
SetI ASST 9 cut(s) 105, 214, 235, 255, 364, 380, 401, 419, 492
SfaNI GCATC 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
Sse9I AATT 7 cut(s) 12, 26, 153, 192, 263, 458, 526
StyD4I CCNGG 2 cut(s) 358, 422
TaaI ACNGT 3 cut(s) 276, 298, 523
TaiI ACGT 1 cut(s) 380
TasI AATT 7 cut(s) 12, 26, 153, 192, 263, 458, 526
TatI WGTACW 1 cut(s) 510
Tru1I TTAA 2 cut(s) 300, 542
Tru9I TTAA 2 cut(s) 300, 542
TscAI CASTG 2 cut(s) 324, 528
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 3 cut(s) 77, 100, 230
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 5 cut(s) 221, 251, 276, 442, 465
TspRI CASTG 2 cut(s) 324, 528
Vha464I CTTAAG 1 cut(s) 541
XagI CCTNNNNNAGG 1 cut(s) 167
XapI RAATTY 2 cut(s) 153, 263
XmiI GTMKAC 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.