AT5G44560

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015854
Physical Location & Seq
Forward (+)
17945923 .. 17948400
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44560.4

Sequence Viewer

Length: 669 bp
ATGAACATTTTCAAGAAGAAGACCACTCCCAAAGATGCTCTTCGTACTAGTAAGAGAGAAATGGCTGTTGCTACTCGAGGTATCGAACGGGAGATTACATCTCTTCAACTAGAGGAGAAGAGACTAGTTGCAGAAATCAAGAAAACAGCTAAGACTGGAAATGAGGCTGCCACAAAGATTTTAGCTCGTCAACTTGTTCGATTGAGGCAACAGATTACCAACTTACAAGGAAGCCGTGCTCAGATTAGGGGTGTAACAACTCATACACAGGCTCTGTATGCCAGCACTTCGATTTCATCTGGTATGAAAGGTGCTACCAAAGCTATGGTTGCAATGAACAAGCAAATGGCACCAACGAAACAAGCCAAGGTGATTAAAGATTTCCAAAAGCAGTCGGCACAGCTAGACATGACGATAGAGATGATGTCAGAGGCAATTGATGAAACACTTGACAAAGATGAGGCTGAAGAAGAAACAGAAGATCTCACTAACCAGGTTCTTGATGAGATTGGTGTTGGTGTTGCATCTCAGTTATCTTCAGCTCCAAAAGGTCGGATTGCTACGAAAACCGCAGCTCCTCCCGCTTCCACTGCAGCTACTAACAAGAACTCTGAATCAAGTGAAGTGGATGAGCTTGAGAAGAGGTTGGCTTCGCTACGACGAATCTGA

Protein Analysis

222

Amino Acids

24.3

Weight (kDa)

9.54

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 18 - 172 1.4e-33 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015854)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44560 AT5G44560
fragaria_vesca FvH4_3g11600
malus_domestica MD05G1262400.v1.1 MD10G1240400.v1.1
prunus_persica Prupe.4G103400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0018561
rosa_laevigata RLG00000032379
rosa_multiflora Rmu_sc0002579.1_g000007 Rmu_sc0007192.1_g000012
rosa_roxburghii Rroxscaffold_1G00059190
rosa_rugosa Rorug05G0045200
rosa_samantha Rh5AG136200 Rh5BG135200
rosa_wichuraiana Rw5G012070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 349
AciI CCGC 2 cut(s) 570, 582
AcuI CTGAAG 2 cut(s) 486, 522
AfaI GTAC 1 cut(s) 46
AgsI TTSAA 2 cut(s) 13, 107
AhlI ACTAGT 2 cut(s) 47, 124
AjnI CCWGG 1 cut(s) 492
AluBI AGCT 8 cut(s) 149, 185, 323, 403, 542, 575, 596, 634
AluI AGCT 8 cut(s) 149, 185, 323, 403, 542, 575, 596, 634
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 115
AlwNI CAGNNNCTG 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 75
ApeKI GCWGC 3 cut(s) 167, 572, 593
Asp700I GAANNNNTTC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 75
BanI GGYRCC 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 3 cut(s) 154, 584, 605
BceAI ACGGC 1 cut(s) 219
BciT130I CCWGG 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 115
BcuI ACTAGT 2 cut(s) 47, 124
BfaI CTAG 4 cut(s) 48, 110, 125, 404
BfmI CTRYAG 1 cut(s) 591
BglII AGATCT 1 cut(s) 481
BisI GCNGC 3 cut(s) 168, 573, 594
BlsI GCNGC 3 cut(s) 169, 574, 595
Bme1390I CCNGG 1 cut(s) 494
BmeT110I CYCGRG 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 1 cut(s) 494
BmsI GCATC 2 cut(s) 25, 533
BpiI GAAGAC 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 656
BsaJI CCNNGG 1 cut(s) 366
BsaXI ACNNNNNCTCC 2 cut(s) 559, 589
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 1 cut(s) 634
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 2 cut(s) 254, 542
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 2 cut(s) 128, 567
BseXI GCAGC 3 cut(s) 154, 584, 605
BshNI GGYRCC 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 241
BsiHKCI CYCGRG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 481
BspACI CCGC 2 cut(s) 570, 582
BspCNI CTCAG 2 cut(s) 253, 541
BspLI GGNNCC 1 cut(s) 351
BspMAI CTGCAG 1 cut(s) 595
BspQI GCTCTTC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 1 cut(s) 481
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 494
Bst6I CTCTTC 4 cut(s) 45, 108, 113, 635
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 3 cut(s) 150, 240, 528
BstF5I GGATG 1 cut(s) 634
BstKTI GATC 1 cut(s) 484
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 1 cut(s) 481
BstMWI GCNNNNNNNGC 5 cut(s) 278, 320, 329, 581, 590
BstNI CCWGG 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 492
BstSFI CTRYAG 1 cut(s) 591
BstV1I GCAGC 3 cut(s) 154, 584, 605
BstV2I GAAGAC 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 481
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 1 cut(s) 481
BtsCI GGATG 1 cut(s) 634
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 1 cut(s) 588
Cac8I GCNNGC 1 cut(s) 283
CaiI CAGNNNCTG 1 cut(s) 274
CsiI ACCWGGT 1 cut(s) 492
Csp6I GTAC 1 cut(s) 45
CspCI CAANNNNNGTGG 2 cut(s) 606, 641
CviAII CATG 1 cut(s) 409
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 3 cut(s) 150, 240, 528
DpnI GATC 1 cut(s) 483
DpnII GATC 1 cut(s) 481
Eam1104I CTCTTC 4 cut(s) 45, 108, 113, 635
EarI CTCTTC 4 cut(s) 45, 108, 113, 635
Eco130I CCWWGG 1 cut(s) 366
Eco57I CTGAAG 2 cut(s) 486, 522
Eco88I CYCGRG 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 1 cut(s) 412
FaiI YATR 5 cut(s) 264, 279, 305, 326, 410
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FatI CATG 1 cut(s) 408
FauI CCCGC 1 cut(s) 589
Fnu4HI GCNGC 3 cut(s) 168, 573, 594
FokI GGATG 1 cut(s) 641
Fsp4HI GCNGC 3 cut(s) 168, 573, 594
FspBI CTAG 4 cut(s) 48, 110, 125, 404
GluI GCNGC 3 cut(s) 168, 573, 594
Hin1II CATG 1 cut(s) 412
HincII GTYRAC 1 cut(s) 191
HindII GTYRAC 1 cut(s) 191
HinfI GANTC 2 cut(s) 614, 663
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 5 cut(s) 243, 430, 555, 613, 668
Hpy188III TCNNGA 3 cut(s) 13, 139, 500
Hpy8I GTNNAC 1 cut(s) 191
Hpy99I CGWCG 1 cut(s) 663
HpyCH4V TGCA 4 cut(s) 131, 332, 524, 593
HpyF10VI GCNNNNNNNGC 5 cut(s) 278, 320, 329, 581, 590
HpyF3I CTNAG 3 cut(s) 150, 240, 528
Hsp92II CATG 1 cut(s) 412
Kzo9I GATC 1 cut(s) 481
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 547, 580
LpnPI CCDG 6 cut(s) 141, 254, 285, 295, 479, 506
Lsp1109I GCAGC 3 cut(s) 154, 584, 605
LweI GCATC 2 cut(s) 25, 533
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 4 cut(s) 48, 110, 125, 404
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 483
MboI GATC 1 cut(s) 481
MfeI CAATTG 1 cut(s) 435
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 1 cut(s) 435
MmeI TCCRAC 1 cut(s) 533
MnlI CCTC 8 cut(s) 71, 106, 157, 198, 424, 454, 588, 636
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 375
MspR9I CCNGG 1 cut(s) 494
MunI CAATTG 1 cut(s) 435
MvaI CCWGG 1 cut(s) 494
MwoI GCNNNNNNNGC 5 cut(s) 278, 320, 329, 581, 590
NdeII GATC 1 cut(s) 481
NlaIII CATG 1 cut(s) 412
NlaIV GGNNCC 1 cut(s) 351
PaeR7I CTCGAG 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 614, 663
PkrI GCNGC 3 cut(s) 169, 574, 595
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
PspN4I GGNNCC 1 cut(s) 351
PspXI VCTCGAGB 1 cut(s) 75
PstI CTGCAG 1 cut(s) 595
PstNI CAGNNNCTG 1 cut(s) 274
PsuI RGATCY 1 cut(s) 481
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 3 cut(s) 168, 573, 594
Sau3AI GATC 1 cut(s) 481
ScrFI CCNGG 1 cut(s) 494
SduI GDGCHC 1 cut(s) 241
SexAI ACCWGGT 1 cut(s) 492
SfaNI GCATC 2 cut(s) 25, 533
SfcI CTRYAG 1 cut(s) 591
Sfr274I CTCGAG 1 cut(s) 75
SlaI CTCGAG 1 cut(s) 75
SmlI CTYRAG 2 cut(s) 75, 635
SmoI CTYRAG 2 cut(s) 75, 635
SpeI ACTAGT 2 cut(s) 47, 124
Sse9I AATT 1 cut(s) 435
SsiI CCGC 2 cut(s) 570, 582
SspMI CTAG 4 cut(s) 48, 110, 125, 404
StyD4I CCNGG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 366
TaqI TCGA 4 cut(s) 76, 84, 199, 290
TasI AATT 1 cut(s) 435
TfiI GAWTC 2 cut(s) 614, 663
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 1 cut(s) 595
TseI GCWGC 3 cut(s) 167, 572, 593
TspDTI ATGAA 5 cut(s) 17, 285, 320, 350, 456
TspRI CASTG 1 cut(s) 595
XhoI CTCGAG 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 4 cut(s) 48, 110, 125, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.