Rh5BG135200

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015854
Physical Location & Seq
Reverse (-)
13418447 .. 13422959
4513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG135200.1

Sequence Viewer

Length: 546 bp
ATGAACCTGAACATCTTCAAGAAGAAGACCTCCCCTAAAGAGGCTCTGAGGTCCAGCAAAAGAGACATGGCTGTTGCTACCAGAGGCATTGAACGTGAGATTTCGTCTCTTCAGTTGGAGGAAAAGAAATTGGTGGCAGAGATCAAGAAAACAGCTAAAACTGGAAATGAGGCTGCCACAAAAATCCTGGCTCGCCAACTTGTTAGGCTACGTCAACAGATTACCAACTTGCAAGGAAGCCGTGCCCAAATAAGAGGCGTAGCTACTCATACACAGGCATTATATGCAAGCACTTCAATTTCCACAGGCATGAAAGGTGCAACTAAAGCAATGGTGGCAATGAACAAGGAAATGCAACCTGCAAAACAAATTAAAGTGATCAGAGAATTCCAGAAGCAGTCAGCACAAATGGACATGACGATTGAAATGATGTCAGAGTCCATTGATGAGACCTTAGACAAAGATGAGGCTGAAGAGGAAACAGAGGAGCTCACTAACCAGGTGGATAGCAGCCTGATTGTACTTTTGTTTTCTTGTATGGGTTGA

Protein Analysis

181

Amino Acids

20.2

Weight (kDa)

9.16

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 20 - 170 5.2e-33 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015854)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44560 AT5G44560
fragaria_vesca FvH4_3g11600
malus_domestica MD05G1262400.v1.1 MD10G1240400.v1.1
prunus_persica Prupe.4G103400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0018561
rosa_laevigata RLG00000032379
rosa_multiflora Rmu_sc0002579.1_g000007 Rmu_sc0007192.1_g000012
rosa_roxburghii Rroxscaffold_1G00059190
rosa_rugosa Rorug05G0045200
rosa_samantha Rh5AG136200 Rh5BG135200
rosa_wichuraiana Rw5G012070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 367
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 2 cut(s) 95, 492
AfaI GTAC 1 cut(s) 522
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 4 cut(s) 19, 92, 297, 425
AjnI CCWGG 2 cut(s) 186, 498
AluBI AGCT 3 cut(s) 155, 263, 490
AluI AGCT 3 cut(s) 155, 263, 490
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 3 cut(s) 57, 111, 443
ApeKI GCWGC 2 cut(s) 173, 510
ApoI RAATTY 1 cut(s) 386
Asp700I GAANNNNTTC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 51
AvaII GGWCC 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 2 cut(s) 160, 522
BceAI ACGGC 1 cut(s) 225
BciT130I CCWGG 2 cut(s) 188, 500
BclI TGATCA 1 cut(s) 378
BcoDI GTCTC 3 cut(s) 57, 111, 443
BfuAI ACCTGC 1 cut(s) 367
BisI GCNGC 2 cut(s) 174, 511
BlsI GCNGC 2 cut(s) 175, 512
Bme1390I CCNGG 2 cut(s) 188, 500
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmrFI CCNGG 2 cut(s) 188, 500
BpiI GAAGAC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 443
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 2 cut(s) 336, 345
BseBI CCWGG 2 cut(s) 188, 500
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 2 cut(s) 336, 345
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 500
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 2 cut(s) 160, 522
BsiHKAI GWGCWC 1 cut(s) 492
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 3 cut(s) 57, 111, 443
BsmBI CGTCTC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 443
Bsp1286I GDGCHC 2 cut(s) 247, 492
Bsp143I GATC 2 cut(s) 141, 378
BspCNI CTCAG 1 cut(s) 39
BspMI ACCTGC 1 cut(s) 367
BspTNI GGTCTC 1 cut(s) 443
BsrDI GCAATG 2 cut(s) 336, 345
BsrI ACTGG 1 cut(s) 166
BssMI GATC 2 cut(s) 141, 378
Bst2UI CCWGG 2 cut(s) 188, 500
Bst6I CTCTTC 2 cut(s) 114, 468
BstAPI GCANNNNNTGC 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 193, 289
BstDEI CTNAG 2 cut(s) 47, 454
BstKTI GATC 2 cut(s) 144, 381
BstMAI GTCTC 3 cut(s) 57, 111, 443
BstMBI GATC 2 cut(s) 141, 378
BstMWI GCNNNNNNNGC 3 cut(s) 284, 326, 335
BstNI CCWGG 2 cut(s) 188, 500
BstSCI CCNGG 2 cut(s) 186, 498
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 2 cut(s) 160, 522
BstV2I GAAGAC 1 cut(s) 32
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 2 cut(s) 193, 289
Cfr13I GGNCC 1 cut(s) 51
CsiI ACCWGGT 1 cut(s) 498
Csp6I GTAC 1 cut(s) 521
CviAII CATG 3 cut(s) 67, 310, 415
CviQI GTAC 1 cut(s) 521
DdeI CTNAG 2 cut(s) 47, 454
DpnI GATC 2 cut(s) 143, 380
DpnII GATC 2 cut(s) 141, 378
Eam1104I CTCTTC 2 cut(s) 114, 468
EarI CTCTTC 2 cut(s) 114, 468
Ecl136II GAGCTC 1 cut(s) 490
Eco24I GRGCYC 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 443
Eco47I GGWCC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 2 cut(s) 95, 492
EcoICRI GAGCTC 1 cut(s) 490
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 186, 498
EcoT38I GRGCYC 1 cut(s) 492
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 3 cut(s) 70, 313, 418
FaiI YATR 7 cut(s) 68, 270, 283, 285, 311, 416, 539
FatI CATG 3 cut(s) 66, 309, 414
FbaI TGATCA 1 cut(s) 378
Fnu4HI GCNGC 2 cut(s) 174, 511
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 2 cut(s) 174, 511
GluI GCNGC 2 cut(s) 174, 511
Hin1II CATG 3 cut(s) 70, 313, 418
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 1 cut(s) 437
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 3 cut(s) 48, 383, 436
Hpy188III TCNNGA 3 cut(s) 19, 145, 391
Hpy8I GTNNAC 1 cut(s) 215
HpyCH4IV ACGT 2 cut(s) 94, 211
HpyCH4V TGCA 5 cut(s) 232, 287, 320, 355, 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 326, 335
HpyF3I CTNAG 2 cut(s) 47, 454
HpySE526I ACGT 2 cut(s) 94, 211
Hsp92II CATG 3 cut(s) 70, 313, 418
Ksp22I TGATCA 1 cut(s) 378
Kzo9I GATC 2 cut(s) 141, 378
LmnI GCTCC 1 cut(s) 487
Lsp1109I GCAGC 2 cut(s) 160, 522
MabI ACCWGGT 1 cut(s) 498
MaeII ACGT 2 cut(s) 94, 211
MalI GATC 2 cut(s) 143, 380
MboI GATC 2 cut(s) 141, 378
MboII GAAGA 5 cut(s) 7, 34, 37, 101, 485
MhlI GDGCHC 2 cut(s) 247, 492
MluCI AATT 4 cut(s) 128, 297, 369, 386
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 1 cut(s) 96
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 308
MspR9I CCNGG 2 cut(s) 188, 500
MvaI CCWGG 2 cut(s) 188, 500
MwoI GCNNNNNNNGC 3 cut(s) 284, 326, 335
NdeII GATC 2 cut(s) 141, 378
NlaIII CATG 3 cut(s) 70, 313, 418
PdmI GAANNNNTTC 1 cut(s) 14
PkrI GCNGC 2 cut(s) 175, 512
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
Psp124BI GAGCTC 1 cut(s) 492
Psp6I CCWGG 2 cut(s) 186, 498
PspGI CCWGG 2 cut(s) 186, 498
PspPI GGNCC 1 cut(s) 51
RsaI GTAC 1 cut(s) 522
RsaNI GTAC 1 cut(s) 521
RseI CAYNNNNRTG 1 cut(s) 308
SacI GAGCTC 1 cut(s) 492
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 2 cut(s) 174, 511
Sau3AI GATC 2 cut(s) 141, 378
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 2 cut(s) 188, 500
SduI GDGCHC 2 cut(s) 247, 492
SexAI ACCWGGT 1 cut(s) 498
SinI GGWCC 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 4 cut(s) 128, 297, 369, 386
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 2 cut(s) 186, 498
TaiI ACGT 2 cut(s) 97, 214
TasI AATT 4 cut(s) 128, 297, 369, 386
TatI WGTACW 1 cut(s) 520
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseI GCWGC 2 cut(s) 173, 510
TspDTI ATGAA 3 cut(s) 17, 326, 356
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.