Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0015854

Physical Location & Seq

Genomic Coordinates Reverse (-)

5283761 .. 5287794

Gene Structure 4034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G103400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCTACGAGGGAGCCGGGAACAAACTGCACGCTCTCCTATAAACAAGATTCAGAAGATTTTGCCCCACTGGTTTGGACTTTGGTGTCTAACTCTCTCTGCTCTCAAGTTCTCAACTTCAGTGGTCACCATGAACATCTTCAAGAAGAAGACCTCCCCCAAAGAGGCTCTGAGGACAAGCAAAAGAGAAATGAGTGTTGCTACCAGAGGTATTGAACGTGAGATCGCATCTCTTCAATTGGAGGAAAAGAAATTGGTGGCGGAGATCAAGAAAACGGCTAAAACTGGAAATGAGGCTGCCACCAAAATCCTGGCTCGTCAACTCGTTAGGCTACGCCAACAAATTACTAACTTGCAAGGAAGTCGTGCCCAAATAAGAGGTGTAGCTACCCATACACAGGCATTATACGCAAGCACTTCTATTTCCACAGGCATGAAAGGTGCAACTAAAGCAATGGTGGCAATGAACAAGCAAATGGAACCTGCAAAACAAGTTAAAGTGATCAGGGAATTCCAGAAGCAGGCGGCTCAAATGGACATGACGATAGAGATGATGTCAGAGTCTATTGATGAAACCCTGGACAAAGATGAGGCTGAGGAGGAAACTGAGGAGCTTACTAACCAGGTTCTTGATGAGATTGGTGTTGATATTGCATCCCAGTTATCTTCAGCTCCAAAGGGCAGAATTGCATCAAGAAATACTGAAAATGTTGCTCCGAGGAGTGCTGCAAATGTAGCTCCGAGGAGTGCTGCAAATGTAGCTCCGAGAAATGCTGAAAATGTTGTTACCAGTTCTGAATCTCCTGATGTTGAGGATCTTGAAAAGAGGTTGGCCTCTCTGCGACGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

284

Amino Acids

31.29

Weight (kDa)

9.7

Isoelectric Point (pI)

56.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44560 AT5G44560
fragaria_vesca	FvH4_3g11600
malus_domestica	MD05G1262400.v1.1 MD10G1240400.v1.1
prunus_persica	Prupe.4G103400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0018561
rosa_laevigata	RLG00000032379
rosa_multiflora	Rmu_sc0002579.1_g000007 Rmu_sc0007192.1_g000012
rosa_roxburghii	Rroxscaffold_1G00059190
rosa_rugosa	Rorug05G0045200
rosa_samantha	Rh5AG136200 Rh5BG135200
rosa_wichuraiana	Rw5G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	490
AciI	CCGC	2 cut(s)	260, 524
AclWI	GGATC	1 cut(s)	822
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	2 cut(s)	102, 651
AfiI	CCNNNNNNNGG	3 cut(s)	163, 397, 520
AgsI	TTSAA	4 cut(s)	142, 215, 236, 821
AjnI	CCWGG	3 cut(s)	309, 576, 621
AluBI	AGCT	5 cut(s)	386, 613, 671, 737, 761
AluI	AGCT	5 cut(s)	386, 613, 671, 737, 761
AlwI	GGATC	1 cut(s)	822
AoxI	GGCC	1 cut(s)	831
ApeKI	GCWGC	3 cut(s)	296, 725, 749
ApoI	RAATTY	1 cut(s)	509
Asp700I	GAANNNNTTC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	155
BbvCI	CCTCAGC	1 cut(s)	594
BbvI	GCAGC	3 cut(s)	283, 712, 736
BceAI	ACGGC	1 cut(s)	291
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	3 cut(s)	311, 578, 623
BclI	TGATCA	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	17
BfuAI	ACCTGC	1 cut(s)	490
BisI	GCNGC	4 cut(s)	297, 525, 726, 750
BlsI	GCNGC	4 cut(s)	298, 526, 727, 751
Bme1390I	CCNGG	4 cut(s)	17, 311, 578, 623
BmiI	GGNNCC	2 cut(s)	14, 480
BmrFI	CCNGG	4 cut(s)	17, 311, 578, 623
BmrI	ACTGGG	1 cut(s)	652
BmsI	GCATC	3 cut(s)	236, 662, 698
BmuI	ACTGGG	1 cut(s)	652
BpiI	GAAGAC	1 cut(s)	155
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	576, 716, 740
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 397, 520
Bse1I	ACTGG	4 cut(s)	74, 289, 658, 789
Bse3DI	GCAATG	2 cut(s)	459, 468
BseBI	CCWGG	3 cut(s)	311, 578, 623
BseDI	CCNNGG	3 cut(s)	576, 716, 740
BseGI	GGATG	1 cut(s)	653
BseLI	CCNNNNNNNGG	3 cut(s)	163, 397, 520
BseMI	GCAATG	2 cut(s)	459, 468
BseMII	CTCAG	3 cut(s)	161, 585, 597
BseNI	ACTGG	4 cut(s)	74, 289, 658, 789
BseRI	GAGGAG	4 cut(s)	611, 623, 733, 757
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	3 cut(s)	283, 712, 736
BsgI	GTGCAG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	833
BsiSI	CCGG	1 cut(s)	16
BslI	CCNNNNNNNGG	3 cut(s)	163, 397, 520
BsnI	GGCC	1 cut(s)	833
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	4 cut(s)	222, 264, 501, 814
BspACI	CCGC	2 cut(s)	260, 524
BspANI	GGCC	1 cut(s)	833
BspCNI	CTCAG	3 cut(s)	162, 586, 598
BspLI	GGNNCC	2 cut(s)	14, 480
BspMI	ACCTGC	1 cut(s)	490
BspPI	GGATC	1 cut(s)	822
BsrDI	GCAATG	2 cut(s)	459, 468
BsrI	ACTGG	4 cut(s)	74, 289, 658, 789
BssECI	CCNNGG	3 cut(s)	576, 716, 740
BssMI	GATC	4 cut(s)	222, 264, 501, 814
Bst2UI	CCWGG	3 cut(s)	311, 578, 623
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	3 cut(s)	31, 412, 522
BstDEI	CTNAG	3 cut(s)	170, 594, 606
BstEII	GGTNACC	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	653
BstKTI	GATC	4 cut(s)	225, 267, 504, 817
BstMBI	GATC	4 cut(s)	222, 264, 501, 814
BstMWI	GCNNNNNNNGC	5 cut(s)	407, 449, 458, 734, 758
BstNI	CCWGG	3 cut(s)	311, 578, 623
BstPI	GGTNACC	1 cut(s)	124
BstSCI	CCNGG	4 cut(s)	15, 309, 576, 621
BstSLI	GKGCMC	1 cut(s)	370
BstV1I	GCAGC	3 cut(s)	283, 712, 736
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	814
BstXI	CCANNNNNNTGG	2 cut(s)	74, 310
BstYI	RGATCY	1 cut(s)	814
BsuRI	GGCC	1 cut(s)	833
BtsCI	GGATG	1 cut(s)	653
BtsIMutI	CAGTG	2 cut(s)	67, 126
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	3 cut(s)	31, 412, 522
CsiI	ACCWGGT	1 cut(s)	621
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviAII	CATG	3 cut(s)	130, 433, 538
DdeI	CTNAG	3 cut(s)	170, 594, 606
DpnI	GATC	4 cut(s)	224, 266, 503, 816
DpnII	GATC	4 cut(s)	222, 264, 501, 814
DrdI	GACNNNNNNGTC	1 cut(s)	84
DseDI	GACNNNNNNGTC	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	275
Eco57I	CTGAAG	2 cut(s)	102, 651
Eco91I	GGTNACC	1 cut(s)	124
EcoO65I	GGTNACC	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	509
EcoRII	CCWGG	3 cut(s)	309, 576, 621
FaeI	CATG	3 cut(s)	133, 436, 541
FaiI	YATR	6 cut(s)	41, 131, 393, 406, 434, 539
FatI	CATG	3 cut(s)	129, 432, 537
FbaI	TGATCA	1 cut(s)	501
Fnu4HI	GCNGC	4 cut(s)	297, 525, 726, 750
FokI	GGATG	1 cut(s)	640
Fsp4HI	GCNGC	4 cut(s)	297, 525, 726, 750
GluI	GCNGC	4 cut(s)	297, 525, 726, 750
HaeIII	GGCC	1 cut(s)	833
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	3 cut(s)	133, 436, 541
HincII	GTYRAC	1 cut(s)	320
HindII	GTYRAC	1 cut(s)	320
HinfI	GANTC	3 cut(s)	49, 560, 797
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	7 cut(s)	54, 171, 559, 717, 741, 765, 796
Hpy188III	TCNNGA	7 cut(s)	142, 268, 514, 629, 693, 803, 818
Hpy8I	GTNNAC	1 cut(s)	320
Hpy99I	CGWCG	1 cut(s)	846
HpyCH4IV	ACGT	2 cut(s)	217, 844
HpyCH4V	TGCA	8 cut(s)	29, 355, 443, 485, 653, 689, 728, 752
HpyF10VI	GCNNNNNNNGC	5 cut(s)	407, 449, 458, 734, 758
HpyF3I	CTNAG	3 cut(s)	170, 594, 606
HpySE526I	ACGT	2 cut(s)	217, 844
Hsp92II	CATG	3 cut(s)	133, 436, 541
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	4 cut(s)	222, 264, 501, 814
LmnI	GCTCC	6 cut(s)	12, 610, 676, 718, 742, 766
Lsp1109I	GCAGC	3 cut(s)	283, 712, 736
LweI	GCATC	3 cut(s)	236, 662, 698
MabI	ACCWGGT	1 cut(s)	621
MaeII	ACGT	2 cut(s)	217, 844
MaeIII	GTNAC	2 cut(s)	124, 784
MalI	GATC	4 cut(s)	224, 266, 503, 816
MboI	GATC	4 cut(s)	222, 264, 501, 814
MboII	GAAGA	6 cut(s)	67, 130, 157, 160, 224, 657
MfeI	CAATTG	1 cut(s)	236
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	5 cut(s)	236, 251, 342, 509, 684
MlyI	GAGTC	1 cut(s)	569
MroXI	GAANNNNTTC	1 cut(s)	137
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	431
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	4 cut(s)	17, 311, 578, 623
MunI	CAATTG	1 cut(s)	236
MvaI	CCWGG	3 cut(s)	311, 578, 623
MwoI	GCNNNNNNNGC	5 cut(s)	407, 449, 458, 734, 758
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	4 cut(s)	222, 264, 501, 814
NlaIII	CATG	3 cut(s)	133, 436, 541
NlaIV	GGNNCC	2 cut(s)	14, 480
NmuCI	GTSAC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	49, 797
PkrI	GCNGC	4 cut(s)	298, 526, 727, 751
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Psp6I	CCWGG	3 cut(s)	309, 576, 621
PspEI	GGTNACC	1 cut(s)	124
PspGI	CCWGG	3 cut(s)	309, 576, 621
PspN4I	GGNNCC	2 cut(s)	14, 480
PsuI	RGATCY	1 cut(s)	814
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	4 cut(s)	297, 525, 726, 750
Sau3AI	GATC	4 cut(s)	222, 264, 501, 814
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	4 cut(s)	17, 311, 578, 623
SduI	GDGCHC	1 cut(s)	370
SexAI	ACCWGGT	1 cut(s)	621
SfaNI	GCATC	3 cut(s)	236, 662, 698
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	5 cut(s)	236, 251, 342, 509, 684
SsiI	CCGC	2 cut(s)	260, 524
StyD4I	CCNGG	4 cut(s)	15, 309, 576, 621
TaiI	ACGT	2 cut(s)	220, 847
TasI	AATT	5 cut(s)	236, 251, 342, 509, 684
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	2 cut(s)	49, 797
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	2 cut(s)	74, 126
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	296, 725, 749
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	4 cut(s)	146, 449, 479, 585
TspRI	CASTG	2 cut(s)	74, 126
XapI	RAATTY	1 cut(s)	509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XmnI	GAANNNNTTC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.