RLG00000032379

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015854
Physical Location & Seq
Reverse (-)
14179579 .. 14184239
4661 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032379

Sequence Viewer

Length: 660 bp
ATGAACCTGAACATCTTCAAGAAGAAGACCTCCCCTAAAGAGGCTCTGAGGTCCAGCAAAAGAGACATGGCTGTTGCTACCAGAGGCATTGAACGTGAGATCTCGTCTCTTCAGTTGGAGGAAAAGAAATTGGTGGCAGAGATCAAGAAAACAGCTAAAACTGGAAATGAGGCTGCCACAAAAATCCTGGCTCGCCAACTTGTTAGGCTACGTCAACAGATTACCAACTTGCAAGGAAGCCGTGCCCAAATAAGAGGCGTAGCTACTCATACACAGGCATTATATGCAAGCACTTCAATTTCCACAGGCATGAAAGGTGCAACTAAAGCAATGGTGGCAATGAACAAGGAAATGCAACCTGCAAAGCAAATTAAAGTGATCAGAGAATTCCAGAAGCAGTCGGCACAAATGGACATGACGATTGAAATGATGTCAGAGTCCATTGATGAGACCTTAGACAAAGATGAGGCTGAAGAGGAAACAGAGGAGCTCACTAACCAGGTTCTCGATGAGATTGGTGTTGATATTGCATCCCAGTTATCTTCAGCTCCAAAAGGCAAGATTGGATCAAGGAATGCTGCAAATGTTGTTCCTAAGAGTTCTGAATCTCCTGATGTTGAGGATCTTGAGAAGAGATTGGCCTCTCTGCGACGCATATGA

Protein Analysis

220

Amino Acids

24.23

Weight (kDa)

9.32

Isoelectric Point (pI)

58.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 20 - 187 4.9e-38 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015854)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44560 AT5G44560
fragaria_vesca FvH4_3g11600
malus_domestica MD05G1262400.v1.1 MD10G1240400.v1.1
prunus_persica Prupe.4G103400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0018561
rosa_laevigata RLG00000032379
rosa_multiflora Rmu_sc0002579.1_g000007 Rmu_sc0007192.1_g000012
rosa_roxburghii Rroxscaffold_1G00059190
rosa_rugosa Rorug05G0045200
rosa_samantha Rh5AG136200 Rh5BG135200
rosa_wichuraiana Rw5G012070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 367
AclWI GGATC 2 cut(s) 574, 630
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 3 cut(s) 95, 492, 528
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 4 cut(s) 19, 92, 297, 425
AjnI CCWGG 2 cut(s) 186, 498
AluBI AGCT 4 cut(s) 155, 263, 490, 548
AluI AGCT 4 cut(s) 155, 263, 490, 548
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 3 cut(s) 57, 111, 443
AlwI GGATC 2 cut(s) 574, 630
AoxI GGCC 1 cut(s) 639
ApeKI GCWGC 2 cut(s) 173, 578
ApoI RAATTY 1 cut(s) 386
Asp700I GAANNNNTTC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 51
AvaII GGWCC 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 2 cut(s) 160, 565
BceAI ACGGC 1 cut(s) 225
BciT130I CCWGG 2 cut(s) 188, 500
BclI TGATCA 1 cut(s) 378
BcoDI GTCTC 3 cut(s) 57, 111, 443
BfuAI ACCTGC 1 cut(s) 367
BglII AGATCT 1 cut(s) 99
BisI GCNGC 2 cut(s) 174, 579
BlsI GCNGC 2 cut(s) 175, 580
Bme1390I CCNGG 2 cut(s) 188, 500
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmrFI CCNGG 2 cut(s) 188, 500
BmrI ACTGGG 1 cut(s) 529
BmsI GCATC 1 cut(s) 539
BmuI ACTGGG 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 647
BsaI GGTCTC 1 cut(s) 443
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 2 cut(s) 166, 535
Bse3DI GCAATG 2 cut(s) 336, 345
BseBI CCWGG 2 cut(s) 188, 500
BseGI GGATG 1 cut(s) 530
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 2 cut(s) 336, 345
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 2 cut(s) 166, 535
BseRI GAGGAG 1 cut(s) 500
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 2 cut(s) 160, 565
BshFI GGCC 1 cut(s) 641
BsiHKAI GWGCWC 1 cut(s) 492
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 3 cut(s) 57, 111, 443
BsmBI CGTCTC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 580
BsnI GGCC 1 cut(s) 641
Bso31I GGTCTC 1 cut(s) 443
Bsp1286I GDGCHC 2 cut(s) 247, 492
Bsp143I GATC 5 cut(s) 99, 141, 378, 566, 622
BspANI GGCC 1 cut(s) 641
BspCNI CTCAG 1 cut(s) 39
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 2 cut(s) 574, 630
BspTNI GGTCTC 1 cut(s) 443
BsrDI GCAATG 2 cut(s) 336, 345
BsrI ACTGG 2 cut(s) 166, 535
BssMI GATC 5 cut(s) 99, 141, 378, 566, 622
Bst2UI CCWGG 2 cut(s) 188, 500
Bst6I CTCTTC 3 cut(s) 114, 468, 626
BstAPI GCANNNNNTGC 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 193, 289
BstDEI CTNAG 3 cut(s) 47, 454, 594
BstF5I GGATG 1 cut(s) 530
BstKTI GATC 5 cut(s) 102, 144, 381, 569, 625
BstMAI GTCTC 3 cut(s) 57, 111, 443
BstMBI GATC 5 cut(s) 99, 141, 378, 566, 622
BstMWI GCNNNNNNNGC 3 cut(s) 284, 326, 335
BstNI CCWGG 2 cut(s) 188, 500
BstSCI CCNGG 2 cut(s) 186, 498
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 2 cut(s) 160, 565
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 2 cut(s) 99, 622
BstYI RGATCY 2 cut(s) 99, 622
BsuRI GGCC 1 cut(s) 641
BtsCI GGATG 1 cut(s) 530
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 2 cut(s) 193, 289
Cfr13I GGNCC 1 cut(s) 51
CsiI ACCWGGT 1 cut(s) 498
CviAII CATG 3 cut(s) 67, 310, 415
DdeI CTNAG 3 cut(s) 47, 454, 594
DpnI GATC 5 cut(s) 101, 143, 380, 568, 624
DpnII GATC 5 cut(s) 99, 141, 378, 566, 622
Eam1104I CTCTTC 3 cut(s) 114, 468, 626
EarI CTCTTC 3 cut(s) 114, 468, 626
Ecl136II GAGCTC 1 cut(s) 490
Eco24I GRGCYC 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 443
Eco47I GGWCC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 3 cut(s) 95, 492, 528
EcoICRI GAGCTC 1 cut(s) 490
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 186, 498
EcoT38I GRGCYC 1 cut(s) 492
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 3 cut(s) 70, 313, 418
FaiI YATR 8 cut(s) 68, 270, 283, 285, 311, 416, 656, 658
FatI CATG 3 cut(s) 66, 309, 414
FauNDI CATATG 1 cut(s) 656
FbaI TGATCA 1 cut(s) 378
Fnu4HI GCNGC 2 cut(s) 174, 579
FokI GGATG 1 cut(s) 517
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 2 cut(s) 174, 579
GluI GCNGC 2 cut(s) 174, 579
HaeIII GGCC 1 cut(s) 641
Hin1II CATG 3 cut(s) 70, 313, 418
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 2 cut(s) 437, 605
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 4 cut(s) 48, 383, 436, 604
Hpy188III TCNNGA 6 cut(s) 19, 145, 391, 506, 611, 626
Hpy8I GTNNAC 1 cut(s) 215
Hpy99I CGWCG 1 cut(s) 654
HpyCH4IV ACGT 2 cut(s) 94, 211
HpyCH4V TGCA 7 cut(s) 232, 287, 320, 355, 362, 530, 581
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 326, 335
HpyF3I CTNAG 3 cut(s) 47, 454, 594
HpySE526I ACGT 2 cut(s) 94, 211
Hsp92II CATG 3 cut(s) 70, 313, 418
Ksp22I TGATCA 1 cut(s) 378
Kzo9I GATC 5 cut(s) 99, 141, 378, 566, 622
LmnI GCTCC 2 cut(s) 487, 553
Lsp1109I GCAGC 2 cut(s) 160, 565
LweI GCATC 1 cut(s) 539
MabI ACCWGGT 1 cut(s) 498
MaeII ACGT 2 cut(s) 94, 211
MalI GATC 5 cut(s) 101, 143, 380, 568, 624
MboI GATC 5 cut(s) 99, 141, 378, 566, 622
MboII GAAGA 7 cut(s) 7, 34, 37, 101, 485, 534, 643
MflI RGATCY 2 cut(s) 99, 622
MhlI GDGCHC 2 cut(s) 247, 492
MluCI AATT 4 cut(s) 128, 297, 369, 386
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 1 cut(s) 96
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 308
MspR9I CCNGG 2 cut(s) 188, 500
Mva1269I GAATGC 1 cut(s) 580
MvaI CCWGG 2 cut(s) 188, 500
MwoI GCNNNNNNNGC 3 cut(s) 284, 326, 335
NdeI CATATG 1 cut(s) 656
NdeII GATC 5 cut(s) 99, 141, 378, 566, 622
NlaIII CATG 3 cut(s) 70, 313, 418
PctI GAATGC 1 cut(s) 580
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 605
PkrI GCNGC 2 cut(s) 175, 580
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
Psp124BI GAGCTC 1 cut(s) 492
Psp6I CCWGG 2 cut(s) 186, 498
PspGI CCWGG 2 cut(s) 186, 498
PspPI GGNCC 1 cut(s) 51
PsuI RGATCY 2 cut(s) 99, 622
RseI CAYNNNNRTG 1 cut(s) 308
SacI GAGCTC 1 cut(s) 492
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 2 cut(s) 174, 579
Sau3AI GATC 5 cut(s) 99, 141, 378, 566, 622
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 2 cut(s) 188, 500
SduI GDGCHC 2 cut(s) 247, 492
SexAI ACCWGGT 1 cut(s) 498
SfaNI GCATC 1 cut(s) 539
SinI GGWCC 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
Sse9I AATT 4 cut(s) 128, 297, 369, 386
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 2 cut(s) 186, 498
TaiI ACGT 2 cut(s) 97, 214
TaqI TCGA 1 cut(s) 507
TasI AATT 4 cut(s) 128, 297, 369, 386
TfiI GAWTC 1 cut(s) 605
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseI GCWGC 2 cut(s) 173, 578
TspDTI ATGAA 3 cut(s) 17, 326, 356
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.