Rorug05G0045200

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015854
Physical Location & Seq
Reverse (-)
3955360 .. 3957074
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0045200.1

Sequence Viewer

Length: 618 bp
ATGGCAGCAGCAGACAAGGCTGAAGACTTGGCGATTCCGGCCGCCGCTCCCCGCGGCCGTTACATCAACAAGAGGGCTCTTAAAAACAAGGCCGTCGCCGTCACTTTCAACGAGAAAGATCTCAGCGACTTTGTTTCTGGGTTTCACAAGAGGAAGAAGAAGAGGAGAAAGGAAGCTGAGAAGAAGCAAGGGGAGGCTTTAAGGCGGAAGCTTCTTGAGCTCCGCAAAAAGAGGAGACTAGAAAAGGAATTGGCTCTCTTTGGTGGAGCTCCCCCAGCTGCTGAGGGAGAAGCTGACGAGAATGATGAGGGAGATGTGAGCCAGGAGGAAGATGAAGAAAGTGAGCCAGATGCACCAATTTCTGGTACAACAACTTACGACAATGGAGACATAAAAGTCACAGTGACGACAAGCGAGATCTCTCAGGAAGAGGAAATACATCCAATTAGAAAGACAGAGGCTGTAGTGCCCGAAACAGTTGGAGCTAATAAAAAGAACAGTGTTCCTGTGAGCAAAAAGAAACCATTTAAAAAAGTTGGAAAGCGCAAATCAGGGCCAAAGATGCAAAAGAAAAGAGATAAAAGGAAAGGAAAGGAAAATAACTCGAAGAGGCGCTAG

Protein Analysis

205

Amino Acids

22.93

Weight (kDa)

9.8

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop25 PF09805 24 - 146 1.1e-13 Nucleolar protein 12 (25kDa)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015854)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44560 AT5G44560
fragaria_vesca FvH4_3g11600
malus_domestica MD05G1262400.v1.1 MD10G1240400.v1.1
prunus_persica Prupe.4G103400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0018561
rosa_laevigata RLG00000032379
rosa_multiflora Rmu_sc0002579.1_g000007 Rmu_sc0007192.1_g000012
rosa_roxburghii Rroxscaffold_1G00059190
rosa_rugosa Rorug05G0045200
rosa_samantha Rh5AG136200 Rh5BG135200
rosa_wichuraiana Rw5G012070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
AccB7I CCANNNNNTGG 1 cut(s) 362
AccBSI CCGCTC 1 cut(s) 47
AccII CGCG 1 cut(s) 54
AciI CCGC 6 cut(s) 42, 45, 52, 54, 205, 223
AcoI YGGCCR 2 cut(s) 39, 55
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 1 cut(s) 362
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 7 cut(s) 176, 211, 220, 269, 278, 293, 485
AluI AGCT 7 cut(s) 176, 211, 220, 269, 278, 293, 485
Alw21I GWGCWC 2 cut(s) 222, 271
Alw26I GTCTC 2 cut(s) 229, 381
AlwNI CAGNNNCTG 2 cut(s) 281, 461
AoxI GGCC 4 cut(s) 39, 55, 90, 554
ApeKI GCWGC 3 cut(s) 5, 8, 278
AspLEI GCGC 2 cut(s) 546, 615
AspS9I GGNCC 1 cut(s) 554
BaeGI GKGCMC 1 cut(s) 471
BanII GRGCYC 3 cut(s) 79, 222, 271
BarI GAAGNNNNNNTAC 2 cut(s) 420, 452
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 2 cut(s) 222, 271
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 3 cut(s) 17, 20, 265
BceAI ACGGC 3 cut(s) 42, 77, 83
BciT130I CCWGG 1 cut(s) 323
BcoDI GTCTC 2 cut(s) 229, 381
BfaI CTAG 2 cut(s) 239, 616
BfmI CTRYAG 1 cut(s) 462
BfoI RGCGCY 1 cut(s) 616
BglII AGATCT 2 cut(s) 118, 417
BisI GCNGC 6 cut(s) 6, 9, 42, 45, 55, 279
BlsI GCNGC 6 cut(s) 7, 10, 43, 46, 56, 280
Bme1390I CCNGG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 554
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 2 cut(s) 340, 552
BpiI GAAGAC 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 362
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMII CTCAG 4 cut(s) 136, 168, 273, 437
BseRI GAGGAG 2 cut(s) 178, 247
BseSI GKGCMC 1 cut(s) 471
BseX3I CGGCCG 2 cut(s) 39, 55
BseXI GCAGC 3 cut(s) 17, 20, 265
BseYI CCCAGC 1 cut(s) 274
Bsh1236I CGCG 1 cut(s) 54
Bsh1285I CGRYCG 2 cut(s) 42, 58
BshFI GGCC 4 cut(s) 41, 57, 92, 556
BsiEI CGRYCG 2 cut(s) 42, 58
BsiHKAI GWGCWC 2 cut(s) 222, 271
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 2 cut(s) 229, 381
BsnI GGCC 4 cut(s) 41, 57, 92, 556
Bsp1286I GDGCHC 4 cut(s) 79, 222, 271, 471
Bsp143I GATC 2 cut(s) 118, 417
BspACI CCGC 6 cut(s) 42, 45, 52, 54, 205, 223
BspANI GGCC 4 cut(s) 41, 57, 92, 556
BspCNI CTCAG 4 cut(s) 135, 169, 274, 436
BspFNI CGCG 1 cut(s) 54
BsrBI CCGCTC 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 2 cut(s) 118, 417
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 3 cut(s) 403, 478, 500
Bst6I CTCTTC 3 cut(s) 155, 423, 602
BstDEI CTNAG 4 cut(s) 122, 177, 282, 423
BstDSI CCRYGG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 439
BstFNI CGCG 1 cut(s) 54
BstH2I RGCGCY 1 cut(s) 616
BstHHI GCGC 2 cut(s) 546, 615
BstKTI GATC 2 cut(s) 121, 420
BstMAI GTCTC 2 cut(s) 229, 381
BstMBI GATC 2 cut(s) 118, 417
BstMCI CGRYCG 2 cut(s) 42, 58
BstMWI GCNNNNNNNGC 5 cut(s) 17, 38, 217, 275, 562
BstNI CCWGG 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 321
BstSFI CTRYAG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 471
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 3 cut(s) 17, 20, 265
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 2 cut(s) 118, 417
BstYI RGATCY 2 cut(s) 118, 417
BstZI CGGCCG 2 cut(s) 39, 55
BsuRI GGCC 4 cut(s) 41, 57, 92, 556
BtgI CCRYGG 1 cut(s) 52
BtsCI GGATG 1 cut(s) 439
BtsIMutI CAGTG 2 cut(s) 408, 505
CaiI CAGNNNCTG 2 cut(s) 281, 461
CfoI GCGC 2 cut(s) 546, 615
Cfr13I GGNCC 1 cut(s) 554
Cfr42I CCGCGG 1 cut(s) 55
Csp6I GTAC 1 cut(s) 366
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 4 cut(s) 122, 177, 282, 423
DpnI GATC 2 cut(s) 120, 419
DpnII GATC 2 cut(s) 118, 417
DraI TTTAAA 1 cut(s) 529
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
EaeI YGGCCR 2 cut(s) 39, 55
EagI CGGCCG 2 cut(s) 39, 55
Eam1104I CTCTTC 3 cut(s) 155, 423, 602
EarI CTCTTC 3 cut(s) 155, 423, 602
EciI GGCGGA 1 cut(s) 220
Ecl136II GAGCTC 2 cut(s) 220, 269
EclXI CGGCCG 2 cut(s) 39, 55
Eco24I GRGCYC 3 cut(s) 79, 222, 271
Eco52I CGGCCG 2 cut(s) 39, 55
Eco53kI GAGCTC 2 cut(s) 220, 269
Eco57I CTGAAG 1 cut(s) 42
EcoICRI GAGCTC 2 cut(s) 220, 269
EcoRII CCWGG 1 cut(s) 321
EcoT38I GRGCYC 3 cut(s) 79, 222, 271
FaiI YATR 1 cut(s) 392
FauI CCCGC 1 cut(s) 59
Fnu4HI GCNGC 6 cut(s) 6, 9, 42, 45, 55, 279
FokI GGATG 1 cut(s) 426
FriOI GRGCYC 3 cut(s) 79, 222, 271
Fsp4HI GCNGC 6 cut(s) 6, 9, 42, 45, 55, 279
FspBI CTAG 2 cut(s) 239, 616
GlaI GCGC 2 cut(s) 545, 614
GluI GCNGC 6 cut(s) 6, 9, 42, 45, 55, 279
GsaI CCCAGC 1 cut(s) 278
HaeII RGCGCY 1 cut(s) 616
HaeIII GGCC 4 cut(s) 41, 57, 92, 556
HapII CCGG 1 cut(s) 38
HhaI GCGC 2 cut(s) 546, 615
Hin6I GCGC 2 cut(s) 544, 613
HinP1I GCGC 2 cut(s) 544, 613
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 1 cut(s) 34
HpaII CCGG 1 cut(s) 38
Hpy188III TCNNGA 2 cut(s) 215, 425
Hpy99I CGWCG 1 cut(s) 98
HpyCH4III ACNGT 3 cut(s) 403, 478, 500
HpyCH4V TGCA 2 cut(s) 353, 565
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 38, 217, 275, 562
HpyF3I CTNAG 4 cut(s) 122, 177, 282, 423
HspAI GCGC 2 cut(s) 544, 613
KspI CCGCGG 1 cut(s) 55
Kzo9I GATC 2 cut(s) 118, 417
LmnI GCTCC 5 cut(s) 52, 225, 266, 274, 482
Lsp1109I GCAGC 3 cut(s) 17, 20, 265
LweI GCATC 2 cut(s) 340, 552
MaeI CTAG 2 cut(s) 239, 616
MaeIII GTNAC 4 cut(s) 59, 100, 397, 403
MalI GATC 2 cut(s) 120, 419
MbiI CCGCTC 1 cut(s) 47
MboI GATC 2 cut(s) 118, 417
MboII GAAGA 8 cut(s) 35, 166, 169, 172, 193, 341, 347, 440
MflI RGATCY 2 cut(s) 118, 417
MhlI GDGCHC 4 cut(s) 79, 222, 271, 471
MluCI AATT 3 cut(s) 248, 357, 444
MmeI TCCRAC 2 cut(s) 460, 517
MseI TTAA 3 cut(s) 81, 200, 528
MspA1I CMGCKG 2 cut(s) 54, 278
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 323
MvaI CCWGG 1 cut(s) 323
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 5 cut(s) 17, 38, 217, 275, 562
NdeII GATC 2 cut(s) 118, 417
NmuCI GTSAC 3 cut(s) 100, 397, 403
PfeI GAWTC 1 cut(s) 34
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 6 cut(s) 7, 10, 43, 46, 56, 280
Psp124BI GAGCTC 2 cut(s) 222, 271
Psp6I CCWGG 1 cut(s) 321
PspFI CCCAGC 1 cut(s) 274
PspGI CCWGG 1 cut(s) 321
PspPI GGNCC 1 cut(s) 554
PstNI CAGNNNCTG 2 cut(s) 281, 461
PsuI RGATCY 2 cut(s) 118, 417
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
SacI GAGCTC 2 cut(s) 222, 271
SacII CCGCGG 1 cut(s) 55
SaqAI TTAA 3 cut(s) 81, 200, 528
SatI GCNGC 6 cut(s) 6, 9, 42, 45, 55, 279
Sau3AI GATC 2 cut(s) 118, 417
Sau96I GGNCC 1 cut(s) 554
ScrFI CCNGG 1 cut(s) 323
SduI GDGCHC 4 cut(s) 79, 222, 271, 471
SetI ASST 7 cut(s) 178, 213, 222, 271, 280, 295, 487
SfaNI GCATC 2 cut(s) 340, 552
SfcI CTRYAG 1 cut(s) 462
Sfr303I CCGCGG 1 cut(s) 55
SgrBI CCGCGG 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 3 cut(s) 248, 357, 444
SsiI CCGC 6 cut(s) 42, 45, 52, 54, 205, 223
SspMI CTAG 2 cut(s) 239, 616
SstI GAGCTC 2 cut(s) 222, 271
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 3 cut(s) 403, 478, 500
TaqI TCGA 1 cut(s) 605
TasI AATT 3 cut(s) 248, 357, 444
TauI GCSGC 3 cut(s) 44, 47, 57
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 3 cut(s) 81, 200, 528
Tru9I TTAA 3 cut(s) 81, 200, 528
TscAI CASTG 2 cut(s) 408, 505
TseFI GTSAC 3 cut(s) 100, 397, 403
TseI GCWGC 3 cut(s) 5, 8, 278
Tsp45I GTSAC 3 cut(s) 100, 397, 403
TspDTI ATGAA 1 cut(s) 348
TspRI CASTG 2 cut(s) 408, 505
Van91I CCANNNNNTGG 1 cut(s) 362
XspI CTAG 2 cut(s) 239, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.